View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12637_low_33 (Length: 249)

Name: NF12637_low_33
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12637_low_33
NF12637_low_33
[»] chr5 (3 HSPs)
chr5 (1-242)||(41886699-41886940)
chr5 (84-143)||(28695710-28695769)
chr5 (84-144)||(28673460-28673520)
[»] chr4 (6 HSPs)
chr4 (76-196)||(7308311-7308431)
chr4 (81-171)||(8186543-8186633)
chr4 (92-171)||(7225346-7225425)
chr4 (93-165)||(532608-532680)
chr4 (96-145)||(1518820-1518869)
chr4 (76-144)||(1481563-1481631)
[»] chr6 (1 HSPs)
chr6 (76-171)||(9411909-9412004)
[»] chr8 (1 HSPs)
chr8 (93-171)||(18314833-18314911)


Alignment Details
Target: chr5 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 41886699 - 41886940
Alignment:
Q  1 catctctgattgtttccctttgctggaagacctcgacctcagtgacccgatacaatgtgtacgctatgatgaggcagagcctctttcactggcacttttc 100  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886699 catctctggttgtttccctttgctggaagacctcgacctcagtgacccgatacaatgtgtacgctatgatgaggcagagcctctttcactggcacttttc 41886798  T
Q  101 aaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatcttgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41886799 aaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaagagagtttctggaagaggtcatcttgc 41886898  T
Q  201 gtgactgttatcgcataacggaggttggtattgtctctgctc 242  Q
    |||||||||||||||||||||||||||||||||| |||||||    
T  41886899 gtgactgttatcgcataacggaggttggtattgtttctgctc 41886940  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 28695710 - 28695769
Alignment:
Q  84 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacg 143  Q
    ||||| || |||||||||||||  | ||||||||||||||| ||||||||||||||||||    
T  28695710 tttcattgccacttttcaaactctgcaaggttaatctctctcgtcatcactacatcaacg 28695769  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 28673460 - 28673520
Alignment:
Q  84 tttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 144  Q
    ||||| || |||||||||||||  | |||||||||||||||  ||||||||||||||||||    
T  28673460 tttcattgccacttttcaaactctgcaaggttaatctctctcatcatcactacatcaacga 28673520  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 7308431 - 7308311
Alignment:
Q  76 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaaaaga 175  Q
    |||| ||||||||| || |||||||||||| || ||||| ||||||||| ||||||  ||||||||| |||| ||||||||| |||||||||||||  |     
T  7308431 agaggctctttcacgggaacttttcaaactccgcaaggtaaatctctctcgtcatcggtacatcaacaataggttgcttttccacttgtttaagaattgt 7308332  T
Q  176 gagtttctggaagaggtcatc 196  Q
     || |||||||||||| ||||    
T  7308331 aagcttctggaagaggccatc 7308311  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 8186543 - 8186633
Alignment:
Q  81 ctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 171  Q
    |||||||| |||||||||||||||| || ||||||||||| |||| |||| |||| |||||||| | |||||||||  ||||||| |||||    
T  8186543 ctctttcattggcacttttcaaacttcgcaaggttaatctatctaatcataactatatcaacgacaaattgctttttcacttgttaaagaa 8186633  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 7225346 - 7225425
Alignment:
Q  92 gcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 171  Q
    |||||||||||||| || | ||||||||||||| ||||| | |||||||| |||  |||||||||| | |||||||||||    
T  7225346 gcacttttcaaactccgtagggttaatctctctggtcatgaatacatcaatgatgaattgcttttccatttgtttaagaa 7225425  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 165
Target Start/End: Complemental strand, 532680 - 532608
Alignment:
Q  93 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtt 165  Q
    ||||||||||||| || ||||||||||| |||| |||| |||||||||||||   || ||||||| |||||||    
T  532680 cacttttcaaactccgcaaggttaatctttctactcatgactacatcaacgaccaatcgcttttccacttgtt 532608  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 1518820 - 1518869
Alignment:
Q  96 ttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgat 145  Q
    |||||||||| || ||| |||||||| ||||||||||||| |||||||||    
T  1518820 ttttcaaactccggaagtttaatctcactagtcatcactatatcaacgat 1518869  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 1481631 - 1481563
Alignment:
Q  76 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacga 144  Q
    |||| |||||||| ||||||| |||||||| || ||| |||||||||||  |||| ||||| |||||||    
T  1481631 agaggctctttcattggcactcttcaaactccgcaagcttaatctctctgatcattactacgtcaacga 1481563  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 171
Target Start/End: Complemental strand, 9412004 - 9411909
Alignment:
Q  76 agagcctctttcactggcacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 171  Q
    |||| |||||||| || |||||||||||||    ||| ||||||||||| ||||||||||||||||||| | ||  || ||| |||||||||||||    
T  9412004 agagactctttcattgacacttttcaaactcaccaagattaatctctctggtcatcactacatcaacgacacatcactcttcaacttgtttaagaa 9411909  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 18314833 - 18314911
Alignment:
Q  93 cacttttcaaactacgaaaggttaatctctctagtcatcactacatcaacgatagattgcttttcgacttgtttaagaa 171  Q
    ||||||||||||| |||||||||||| || ||  |||| ||||||||||||||  || ||||||| ||||||| |||||    
T  18314833 cacttttcaaactccgaaaggttaatttcgctgatcattactacatcaacgatcaatcgcttttccacttgttcaagaa 18314911  T

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