View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_35 (Length: 244)
Name: NF12637_low_35
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 31455208 - 31454992
Alignment:
| Q |
18 |
gattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaactacatgcatctaaaagtgtaactgaaccacttaatgaatcttcca |
117 |
Q |
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| T |
31455208 |
gattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaaccacatgcatctaaaagtgtaactgaaccacttaatgaatcttcca |
31455109 |
T |
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| Q |
118 |
ctagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatc |
217 |
Q |
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| T |
31455108 |
ctagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattggaagagttcttccatgcaattgtataactcagcaagcacaaccaaatc |
31455009 |
T |
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| Q |
218 |
actttgaattgtctctg |
234 |
Q |
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| T |
31455008 |
actttgaattgtctctg |
31454992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 9385376 - 9385463
Alignment:
| Q |
149 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctgct |
236 |
Q |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctgct |
9385463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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