View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_39 (Length: 237)
Name: NF12637_low_39
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 30 - 221
Target Start/End: Complemental strand, 6514122 - 6513927
Alignment:
| Q |
30 |
tacttttttaatgtatatttctgacaattttgttataaaaaactatgttcttgttatttnnnnnnnntggtaacaaataaatatgtggtcaaaacaagct |
129 |
Q |
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| T |
6514122 |
tacttttttaatgtatatttttgacaattttgttataaaaaactatgttcttgttatttaaaaaaaatggtaacaaataaatatgtggtcaaaacaagct |
6514023 |
T |
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| Q |
130 |
tat----gagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacattt |
221 |
Q |
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| T |
6514022 |
tatatatgagacaaatccaacactatcaacataattaaaaaataaaacattgtaattaatagtagcaatgccaccattataaatccaacaacattt |
6513927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 120 - 192
Target Start/End: Complemental strand, 39854098 - 39854026
Alignment:
| Q |
120 |
aaaacaagcttatgagacaaatccaacactatcaacataattaaaaaataaaacatcgtaattaatagtagca |
192 |
Q |
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| T |
39854098 |
aaaacaagcttatgagacaaatccaacatcatcaacatagttaagaaatacaacatcacaattaatagcagca |
39854026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 97 - 205
Target Start/End: Original strand, 13055950 - 13056058
Alignment:
| Q |
97 |
tggtaacaaataaatatgtggtcaaaacaagcttatgagacaaatccaacactatcaacataattaa-aaaataaaacatcgtaattaatagtagcaatg |
195 |
Q |
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||||| ||||||||| |||||| | ||||||||| |||||||||||||||| |||||||||||||| ||||| ||| ||| |||| ||||| | ||||| |
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| T |
13055950 |
tggtatcaaataaatttgtggtagatacaagcttaggagacaaatccaacaccatcaacataattaacaaaatcaaa-atcataatcaatagcaacaatg |
13056048 |
T |
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| Q |
196 |
ccaccattat |
205 |
Q |
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|||| ||||| |
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| T |
13056049 |
ccacaattat |
13056058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 220
Target Start/End: Complemental strand, 32918369 - 32918301
Alignment:
| Q |
152 |
caacataattaaaaaataaaacatcgtaattaatagtagcaatgccaccattataaatccaacaacatt |
220 |
Q |
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|||||||||||| |||| | |||| |||||||||| | |||| ||||||||||||||||||||||| |
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| T |
32918369 |
caacataattaacaaatgtagcatcataattaatagcaataatgtgaccattataaatccaacaacatt |
32918301 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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