View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12637_low_8 (Length: 451)
Name: NF12637_low_8
Description: NF12637
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12637_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Complemental strand, 43357548 - 43357132
Alignment:
| Q |
18 |
gtcaaatatagtaaaacagcagtgtcatggggccataataacaaacacttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattg |
117 |
Q |
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| T |
43357548 |
gtcaaatatagtaaaacagcagtgtcatggggccataataaca----cttcaaaagaaggatgcgaccttactcaaatttccaaaaccagggtccaattg |
43357453 |
T |
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| Q |
118 |
aattattatcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactgcactcaatc |
217 |
Q |
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| T |
43357452 |
aattattatcataattacctcataacttttgctttctacgttttcttcgttttataacggtcctcattatgacatttcaggaccagtactgcactcaatc |
43357353 |
T |
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| Q |
218 |
ctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaaccttt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43357352 |
ctcgtatatataaacacctttgtgtaatgttcctcctcattcaacatcaacaatggatgtcagagaaaactcaaaggaactgcagcaactgcaaaccttt |
43357253 |
T |
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| Q |
318 |
gctaaacaagaacaatgcaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgcattctttgtaccag |
417 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
43357252 |
gctaaacaagaacaatacaacatctaccccatgaatttcaatgtgctagagaatacaaaaggcaacactaacagatgtaattctgtattctttgtaccag |
43357153 |
T |
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| Q |
418 |
gtgaaggatattctgatgtcc |
438 |
Q |
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| T |
43357152 |
gtgaaggatattctgatgtcc |
43357132 |
T |
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