View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12638_low_2 (Length: 383)
Name: NF12638_low_2
Description: NF12638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12638_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 9 - 371
Target Start/End: Original strand, 38198031 - 38198393
Alignment:
| Q |
9 |
agcataggaggttgtgtttttaagagacctggtaatgatgaaataagttcaacaaaatttataaaagcataacttccttcatcatgtaataattttcttt |
108 |
Q |
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| T |
38198031 |
agcagaggaggttgtgtttttaagagacctggtaatgatgaaataagttcaacaaaatttataaatgcataacttccttcatcatgtaataattttcttt |
38198130 |
T |
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| Q |
109 |
tttcatacatgaacataaacttgcttctgtatatcataagaacttcaagtctatgcatgacacctannnnnnngctgaatagatagagttttctaataat |
208 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
38198131 |
tttcatacatgaacataaacttacttctgtatatcataagaatttcaagtctatgcatgacacctatttttttgctgaatagatagagttttctaataat |
38198230 |
T |
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| Q |
209 |
ataacaatcagaatgaaagattaaaagttttcaacttaaagttctcttgtctataactcaatatgcgtcattttttccctccattttgttaaatgttaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
38198231 |
ataacaatcagaatgaaagattaaaagttttcaacttaaagttctcttgtctataactcaatatgcatcattttttccctccattttgttaaatgttaag |
38198330 |
T |
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| Q |
309 |
gggatgttccaagagtggatggccagttagcaatgacaagagcatttggagatggaaaactga |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38198331 |
gggatgttccaagagtggatggccagttagcaatgacaagagcatttggagatggaaaactga |
38198393 |
T |
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