View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12639_low_6 (Length: 205)
Name: NF12639_low_6
Description: NF12639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12639_low_6 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr2 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 14688575 - 14688371
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||| |
|
|
| T |
14688575 |
gtctccaaaagagaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacag |
14688476 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| |||||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14688475 |
agccagcatccatggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtg |
14688376 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
||||| |
|
|
| T |
14688375 |
atgtc |
14688371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 7360577 - 7360373
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| |||||| |||||||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
7360577 |
gtctccaaaagagacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacag |
7360478 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||| || |||||||| ||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
7360477 |
agccagcatccatggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtg |
7360378 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
|||| |
|
|
| T |
7360377 |
gtgtc |
7360373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 10787218 - 10787422
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||| || ||| ||||| |||||||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
10787218 |
gtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacag |
10787317 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
||||||| ||||| ||||||| || ||||||||||| ||||| || |||||||||| || |||| ||||||||| ||||||| ||||||||||||||| |
|
|
| T |
10787318 |
agccagcgtccatagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtg |
10787417 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
||||| |
|
|
| T |
10787418 |
atgtc |
10787422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 14329106 - 14328902
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
14329106 |
gtctccaaaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacag |
14329007 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||| ||| |||||||| |||||||||| ||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
14329006 |
agccagcatccatggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtg |
14328907 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
||||| |
|
|
| T |
14328906 |
atgtc |
14328902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 18166741 - 18166544
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| |||||||||||| ||||||||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
18166741 |
gtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacag |
18166642 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatg |
198 |
Q |
| |
|
| ||||||||||| || ||| | ||||| | | || ||||| || | |||||| |||||||| ||| || ||||| ||||||||||| |||||| |
|
|
| T |
18166641 |
aaccagcatccatagcgttcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 24954770 - 24954974
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
24954770 |
gtctccagaagagaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacag |
24954869 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| | |||||||| |||| || ||||||||| ||||||||||||||||||||||| |
|
|
| T |
24954870 |
agccagcatccatggcattcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtg |
24954969 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
|||| |
|
|
| T |
24954970 |
ttgtc |
24954974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 23195964 - 23195852
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| |||||||||||| ||||||||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
23195964 |
gtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacag |
23195865 |
T |
|
| Q |
101 |
agccagcatccat |
113 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
23195864 |
aaccagcatccat |
23195852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 23621568 - 23621449
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| |||||| ||||| ||||||||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
23621568 |
gtctccaaaagagaccaaaagtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacag |
23621469 |
T |
|
| Q |
101 |
agccagcatccatggcattc |
120 |
Q |
| |
|
| ||||||||||| |||||| |
|
|
| T |
23621468 |
aaccagcatccatagcattc |
23621449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 7e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1730036 - 1730240
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||| |||| || ||| | ||| ||| |||||||||| || |||||||| ||||||| ||||| |
|
|
| T |
1730036 |
gtctccaaaagagaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacag |
1730135 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||||| ||||| ||| |||||||||| | ||||| |||||| || |||||||||||||||||||| || |
|
|
| T |
1730136 |
agccagcgtccatagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatg |
1730235 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
||||| |
|
|
| T |
1730236 |
atgtc |
1730240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 92; Significance: 7e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 26 - 205
Target Start/End: Complemental strand, 41375528 - 41375349
Alignment:
| Q |
26 |
gaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacagagccagcatccatggcattcttcag |
125 |
Q |
| |
|
|||||||| |||||| |||| || ||| ||||| |||||||||||||| || |||||||| ||||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
41375528 |
gaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattcttcag |
41375429 |
T |
|
| Q |
126 |
caagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtgatgtc |
205 |
Q |
| |
|
||||||||||| ||||| || |||||||||| ||||||| ||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
41375428 |
caagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtc |
41375349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 22081035 - 22081239
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||| ||||||||||||||||| || |||||||||||||| ||||||||||| || |||| ||||| |
|
|
| T |
22081035 |
gtctccaaaagagaccagaaatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacag |
22081134 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaagccttggatagtagggatatagggctcaggatccagcaggaactgggtgcacctcaaaatgcagaacatgtg |
200 |
Q |
| |
|
| |||||||||||||| ||||| || || |||| || ||||| || | |||||| ||||| || || ||||| || ||||||||||| ||||| || |
|
|
| T |
22081135 |
aaccagcatccatggcgttcttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatg |
22081234 |
T |
|
| Q |
201 |
atgtc |
205 |
Q |
| |
|
||||| |
|
|
| T |
22081235 |
atgtc |
22081239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 38974 - 39086
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||| |||||||||||| ||||||||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
38974 |
gtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacag |
39073 |
T |
|
| Q |
101 |
agccagcatccat |
113 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
39074 |
aaccagcatccat |
39086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32764 - 32652
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||| |||||||||||| ||||||||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
32764 |
gtctccaaaagagaccaaaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacag |
32665 |
T |
|
| Q |
101 |
agccagcatccat |
113 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
32664 |
aaccagcatccat |
32652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 3958 - 3832
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| |||||||||||| ||||| ||||| ||||| ||||||| || || ||||| || |||| ||||| |
|
|
| T |
3958 |
gtctccaaaagagaccaaaagtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacag |
3859 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagca |
127 |
Q |
| |
|
| |||||||||||||| ||||| |||| |
|
|
| T |
3858 |
aaccagcatccatggcgttcttaagca |
3832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 74498 - 74625
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| |||||||||||||||||||||||| || || |||| || || || ||||| || |||| ||||| |
|
|
| T |
74498 |
gtctccaaaagagaccaaaactcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacag |
74597 |
T |
|
| Q |
101 |
agccagcatccatggcattcttcagcaa |
128 |
Q |
| |
|
| ||||||||||| || ||||| ||||| |
|
|
| T |
74598 |
aaccagcatccatagcgttcttaagcaa |
74625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 13284487 - 13284375
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| || ||| || ||||||||| ||||||||||| ||||||||||||| || || ||||| || ||| ||||| |
|
|
| T |
13284487 |
gtctccaaaagagaccaaaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacag |
13284388 |
T |
|
| Q |
101 |
agccagcatccat |
113 |
Q |
| |
|
||||||| ||||| |
|
|
| T |
13284387 |
agccagcgtccat |
13284375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 14562345 - 14562226
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||| || || |||||| ||||||||||| | ||||||||||| || || ||||| || ||| ||||| |
|
|
| T |
14562345 |
gtctccaaaagagaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacag |
14562246 |
T |
|
| Q |
101 |
agccagcatccatggcattc |
120 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
14562245 |
agccagcgtccatagcattc |
14562226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 12395 - 12276
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||| || ||||||||| |||||| |||| ||||||||||||| || | ||||| || ||| ||||| |
|
|
| T |
12395 |
gtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacag |
12296 |
T |
|
| Q |
101 |
agccagcatccatggcattc |
120 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
12295 |
agccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 18146 - 18027
Alignment:
| Q |
1 |
gtctccaaaagagaccagaaatcacgaaaaagtgtagcggtatcaggtgtgataccgtccagcgccctcagcagcacgtcgaagtatagggcgggcacag |
100 |
Q |
| |
|
||||||||||||||||| || ||| |||||| || ||||||||| |||||| |||| ||||||||||||| || | ||||| || ||| ||||| |
|
|
| T |
18146 |
gtctccaaaagagaccaaaagtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacag |
18047 |
T |
|
| Q |
101 |
agccagcatccatggcattc |
120 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
18046 |
agccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University