View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263R-Insertion-10 (Length: 616)
Name: NF1263R-Insertion-10
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263R-Insertion-10 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 9 - 319
Target Start/End: Original strand, 3104451 - 3104764
Alignment:
| Q |
9 |
cagaattcccagttcatggatgtgttggtgttattcaccaatatttaggtttgatacgtgagtctactgaagagttaaatcgcacacaaagtttactagc |
108 |
Q |
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| T |
3104451 |
cagaattccccgttcatggatgtgttggtgttattcatcaatatttaggtttgatacgcgagtctacggaagagttaaatcgcacacaaagtttactagc |
3104550 |
T |
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| Q |
109 |
tatttgtaagatgaacaaccattcacaacaacaaaatctccaatcctccctaccttccactgctcctcaagaaacaaatattccaacgtttacattggaa |
208 |
Q |
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| T |
3104551 |
tatttgtaagatgaacaaccattcacaacaacaaaatctccactcctccctaccttccactgctcctcaagaaacaaatattccatcgtttgcgttggat |
3104650 |
T |
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| Q |
209 |
gaccttaataacgaagaattgaatgaccttga---tggtgttgatgtcggttcagattttgatccagatgaatttttcaagggcgtagaagaatacgagg |
305 |
Q |
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| T |
3104651 |
gaccttgataacgaagaattgaatgaccttgatggtggtgttgatgccggttgggatcttgaaccagatgacttttttaaggacatagaagaatataagg |
3104750 |
T |
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| Q |
306 |
aatggatgcgtatg |
319 |
Q |
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| T |
3104751 |
aaaggatgtgtatg |
3104764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 469 - 595
Target Start/End: Complemental strand, 12758061 - 12757937
Alignment:
| Q |
469 |
gttctacttgcatctaattgctttattagtctttactttaattgtaacttgatgcttggaagatgaatagttcatagattttggcagaaactatctaact |
568 |
Q |
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| T |
12758061 |
gttctacttgcatctaattgctttattagtctttactttaattgtaactcgatgcttagaagatgaatagttc--agattttggcataaactatctaact |
12757964 |
T |
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| Q |
569 |
tatgccatgaatataagttatttttag |
595 |
Q |
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| T |
12757963 |
tatgacatgaatataagttatttttag |
12757937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 469 - 595
Target Start/End: Original strand, 14655778 - 14655902
Alignment:
| Q |
469 |
gttctacttgcatctaattgctttattagtctttactttaattgtaacttgatgcttggaagatgaatagttcatagattttggcagaaactatctaact |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||||||||| |
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| T |
14655778 |
gttctacttgcatctaattgctttattagtctttactttaattgtaactcgatgcttagaagatgaatagtt--tagattttggcataaactatctaact |
14655875 |
T |
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| Q |
569 |
tatgccatgaatataagttatttttag |
595 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
14655876 |
tatgacatgaatataagttatttttag |
14655902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 320 - 396
Target Start/End: Complemental strand, 12758209 - 12758133
Alignment:
| Q |
320 |
taaacttatgttttgttccgttacttcacttgtataaggtggatgaaattgaagaatgttttaggtgttgtattgtg |
396 |
Q |
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| T |
12758209 |
taaacttatgttttgttccgttacttcacttgtataaggttgatgaaattgcagaatgttttgggtgttgtattgtg |
12758133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 480 - 558
Target Start/End: Original strand, 3111794 - 3111871
Alignment:
| Q |
480 |
atctaattgctttattagtctttactttaattgtaacttgatgcttggaagatgaatagttcatagattttggcagaaa |
558 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||| ||| ||||||||||| ||||| |||||||||||||||| |
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| T |
3111794 |
atctaattgctttactagtctt-actgtaattgtaactcgatttttggaagatgactagtttgtagattttggcagaaa |
3111871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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