View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263R-Insertion-11 (Length: 766)

Name: NF1263R-Insertion-11
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263R-Insertion-11
NF1263R-Insertion-11
[»] chr3 (23 HSPs)
chr3 (239-766)||(50094607-50095133)
chr3 (9-242)||(50095175-50095408)
chr3 (284-332)||(25627908-25627956)
chr3 (284-332)||(22339809-22339857)
chr3 (284-332)||(51642416-51642464)
chr3 (284-331)||(9264075-9264122)
chr3 (284-331)||(9264282-9264329)
chr3 (284-331)||(22407430-22407477)
chr3 (284-331)||(22407637-22407684)
chr3 (284-331)||(44573707-44573754)
chr3 (284-331)||(44574004-44574051)
chr3 (284-331)||(47833642-47833689)
chr3 (284-331)||(50692391-50692438)
chr3 (284-331)||(50692594-50692641)
chr3 (284-331)||(51338392-51338439)
chr3 (284-331)||(51642624-51642671)
chr3 (284-322)||(9179201-9179239)
chr3 (284-326)||(13769285-13769327)
chr3 (284-329)||(4191113-4191158)
chr3 (286-331)||(4255989-4256034)
chr3 (284-329)||(5440685-5440730)
chr3 (295-332)||(21832187-21832224)
chr3 (295-332)||(50203845-50203882)
[»] chr1 (15 HSPs)
chr1 (499-606)||(7073822-7073929)
chr1 (284-333)||(21638253-21638302)
chr1 (284-331)||(33879767-33879814)
chr1 (284-331)||(33964441-33964488)
chr1 (284-331)||(35926237-35926284)
chr1 (284-332)||(45403508-45403556)
chr1 (139-210)||(7074127-7074197)
chr1 (284-331)||(13959470-13959517)
chr1 (284-331)||(19481381-19481428)
chr1 (284-331)||(20735590-20735637)
chr1 (284-331)||(29273055-29273102)
chr1 (284-331)||(29273214-29273261)
chr1 (284-318)||(52923720-52923754)
chr1 (284-333)||(8520080-8520129)
chr1 (284-329)||(33342269-33342314)
[»] chr5 (22 HSPs)
chr5 (122-212)||(35497317-35497406)
chr5 (488-605)||(35497592-35497709)
chr5 (690-766)||(35497817-35497893)
chr5 (284-331)||(18914150-18914197)
chr5 (285-331)||(40168848-40168894)
chr5 (284-332)||(873684-873732)
chr5 (295-331)||(13844092-13844128)
chr5 (284-331)||(2908758-2908805)
chr5 (284-331)||(3762974-3763021)
chr5 (284-331)||(12965235-12965282)
chr5 (284-331)||(13413652-13413699)
chr5 (284-331)||(13843765-13843812)
chr5 (284-331)||(15287121-15287168)
chr5 (284-331)||(18914357-18914404)
chr5 (284-331)||(24994137-24994184)
chr5 (284-331)||(34457164-34457211)
chr5 (284-331)||(34457371-34457418)
chr5 (284-331)||(38131832-38131879)
chr5 (284-331)||(40169030-40169077)
chr5 (284-329)||(24918229-24918274)
chr5 (296-329)||(26246004-26246037)
chr5 (284-329)||(28358026-28358071)
[»] chr8 (17 HSPs)
chr8 (284-332)||(20298504-20298552)
chr8 (284-332)||(21085136-21085184)
chr8 (245-285)||(36994023-36994063)
chr8 (284-331)||(3183900-3183947)
chr8 (284-331)||(7621962-7622009)
chr8 (284-331)||(10989023-10989070)
chr8 (284-331)||(10989230-10989277)
chr8 (284-331)||(16454624-16454671)
chr8 (284-331)||(18905924-18905971)
chr8 (284-331)||(32931469-32931516)
chr8 (284-331)||(36997234-36997281)
chr8 (284-331)||(43599379-43599426)
chr8 (285-331)||(33435748-33435794)
chr8 (285-331)||(40754513-40754559)
chr8 (294-331)||(30066060-30066097)
chr8 (248-285)||(34248335-34248372)
chr8 (294-331)||(43599550-43599587)
[»] chr7 (9 HSPs)
chr7 (284-331)||(23821665-23821712)
chr7 (288-331)||(258501-258544)
chr7 (284-331)||(1663593-1663640)
chr7 (284-331)||(6783106-6783153)
chr7 (284-331)||(8585159-8585206)
chr7 (284-331)||(23396677-23396724)
chr7 (284-331)||(41670901-41670948)
chr7 (286-331)||(5775952-5775997)
chr7 (284-329)||(29780215-29780260)
[»] chr2 (8 HSPs)
chr2 (284-331)||(31761200-31761247)
chr2 (284-326)||(10849485-10849527)
chr2 (284-332)||(23054394-23054442)
chr2 (284-331)||(21214190-21214237)
chr2 (284-331)||(32667251-32667298)
chr2 (284-331)||(33985760-33985807)
chr2 (284-331)||(42768323-42768370)
chr2 (284-331)||(43195852-43195899)
[»] scaffold0054 (1 HSPs)
scaffold0054 (284-331)||(21252-21299)
[»] chr6 (13 HSPs)
chr6 (284-331)||(24558856-24558903)
chr6 (245-285)||(26809256-26809296)
chr6 (284-331)||(1744831-1744878)
chr6 (284-331)||(16876819-16876866)
chr6 (284-331)||(16876999-16877046)
chr6 (284-331)||(19291907-19291954)
chr6 (284-331)||(19712598-19712645)
chr6 (284-331)||(24055098-24055145)
chr6 (284-331)||(28149861-28149908)
chr6 (284-318)||(35236508-35236542)
chr6 (285-330)||(12124694-12124739)
chr6 (294-331)||(21089152-21089189)
chr6 (284-333)||(27914313-27914362)
[»] chr4 (21 HSPs)
chr4 (284-331)||(990615-990662)
chr4 (284-331)||(29113517-29113564)
chr4 (284-331)||(32987460-32987507)
chr4 (284-330)||(45426926-45426972)
chr4 (284-333)||(28395245-28395294)
chr4 (284-332)||(23018538-23018586)
chr4 (284-332)||(50858080-50858128)
chr4 (292-331)||(20545901-20545940)
chr4 (284-331)||(29669352-29669399)
chr4 (284-331)||(34205982-34206029)
chr4 (284-331)||(36558455-36558502)
chr4 (284-331)||(45427241-45427288)
chr4 (284-331)||(51470551-51470598)
chr4 (284-331)||(52214683-52214730)
chr4 (284-331)||(53740250-53740297)
chr4 (284-330)||(43972423-43972469)
chr4 (285-331)||(50858394-50858440)
chr4 (294-331)||(15664914-15664951)
chr4 (295-332)||(22865848-22865885)
chr4 (248-285)||(34206085-34206122)
chr4 (252-285)||(53739846-53739879)
[»] scaffold0989 (1 HSPs)
scaffold0989 (286-331)||(2936-2981)
[»] scaffold0060 (1 HSPs)
scaffold0060 (284-331)||(20608-20655)


Alignment Details
Target: chr3 (Bit Score: 484; Significance: 0; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 239 - 766
Target Start/End: Complemental strand, 50095133 - 50094607
Alignment:
Q  239 cgtgccggcttgctttgtgttggctttgagggggtggagttagtcccttacaagttggttttgtaatgatgagttaggccctaaatttcaacacacttgt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  50095133 cgtgccggcttgctttgtgttggctttgagggggtggagttagtcccttacaagttggttttgtaatgatgagttagaccctaaatttcaacacacttgt 50095034  T
Q  339 gaattagtgtagccactaatttcatctaaataatatttttctatcaaacacgggtttttgccttgtatgactccttttactcagctgtacattcaataca 438  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50095033 gaattagagtagccactaatttcatctagataatatttttctatcaa-cacgggtttttgccttgtatgactcattttactcagctgtacattcaataca 50094935  T
Q  439 gtaatcacaaatgacattaggtgcaaatggacctggctgaaagaaaacagaaataactgtcaacgagccatatctgacatctttttccatttctctccaa 538  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50094934 gtaatcacaaatgacattaggtgcaaatggacctggctgaaagaaaacaaaaataactgtcaacgagccatatctgacatctttttccatttctctccaa 50094835  T
Q  539 ttactcttaccacatccgtaaatgaaatcccaatattagttttctttagattccgtcattaagaaaaagcagtgtttgaaattcattccatcaacagttt 638  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  50094834 ttactcttaccacatccgtaaatgaaatcccaatattagttttctttagattctgtcattaagaaaaagcagtgtttgaaattcattccatcaacagttt 50094735  T
Q  639 tagacaattttacagaagaaaagtgatcatttccacaccaccggtatgtaaaacataaaacacacctctctttcctttcgagaaaataacttgaatccag 738  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50094734 tagacaattttatagaagaaaagtgatcatttccacgccaccggtatgtaaaacataaaacacacctctctttcctttcgagaaaataacttgaatccag 50094635  T
Q  739 acaacacacttttgggagcatttggatc 766  Q
    |||||||||| |||||||||||||||||    
T  50094634 acaacacactcttgggagcatttggatc 50094607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 50095408 - 50095175
Alignment:
Q  9 attaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaatgacttataagttataagcaaa 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50095408 attaggtcatcccaaagagcataaatatgcatcaatttaccgtagaagatgccacaatcatttagatatatcaaagaatgacttataagttataagcaaa 50095309  T
Q  109 cataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatattcattggt 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50095308 cataaaacaatatacgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggatcaatattcattggt 50095209  T
Q  209 tgtgcttgttgttggaaatcctgcccataacgtg 242  Q
    |||||||||||||||||||| |||||||||||||    
T  50095208 tgtgcttgttgttggaaatcttgcccataacgtg 50095175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 25627956 - 25627908
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    ||||||||||||||||||||| |||||||||||||| ||||| ||||||    
T  25627956 ccttacaagttggttttgtaaggatgagttaggccccaaattccaacac 25627908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 22339809 - 22339857
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||| |||||||||| ||||||||||||||  |||||||||||    
T  22339809 ccttacaagtcggttttgtaaggatgagttaggcccccaatttcaacac 22339857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 51642464 - 51642416
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  51642464 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 51642416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 9264122 - 9264075
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  9264122 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 9264075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 9264329 - 9264282
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  9264329 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 9264282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 22407477 - 22407430
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  22407477 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 22407684 - 22407637
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  22407684 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 22407637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 44573707 - 44573754
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  44573707 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44573754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 44574004 - 44574051
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  44574004 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 44574051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 47833689 - 47833642
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| ||||| |||||||| |||||||||||    
T  47833689 ccttacaagctggttttgtaaggatgatttaggccccaaatttcaaca 47833642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 50692391 - 50692438
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  50692391 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 50692438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 50692594 - 50692641
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  50692594 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 50692641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 51338439 - 51338392
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  51338439 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 51338392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 51642671 - 51642624
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  51642671 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 51642624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 322
Target Start/End: Original strand, 9179201 - 9179239
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaa 322  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  9179201 ccttacaagtcggttttgtaaggatgagttaggccctaa 9179239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 13769327 - 13769285
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaattt 326  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  13769327 ccttacaagctggttttgtaaggatgagttaggccccaaattt 13769285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 4191158 - 4191113
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||    
T  4191158 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaa 4191113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 4255989 - 4256034
Alignment:
Q  286 ttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||  |||||||||| |||||||||||||| |||||||||||    
T  4255989 ttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 4256034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 5440685 - 5440730
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    ||||||||| ||||||||||| |||||||||| |||| ||||||||    
T  5440685 ccttacaagctggttttgtaaggatgagttagaccctcaatttcaa 5440730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 21832224 - 21832187
Alignment:
Q  295 ggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  21832224 ggttttgtaaggatgagttaggccccaaatttcaacac 21832187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 50203882 - 50203845
Alignment:
Q  295 ggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  50203882 ggttttgtaaggatgagttaggccccaaatttcaacac 50203845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 499 - 606
Target Start/End: Complemental strand, 7073929 - 7073822
Alignment:
Q  499 caacgagccatatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttagattccgtcatt 598  Q
    |||| ||||||| ||||||  ||||||||||| ||||||| ||||||| |||| |||||||||||||| |||  ||||||||||||||||||| ||||||    
T  7073929 caaccagccatacctgacagatttttccatttttctccaagtactcttcccacgtccgtaaatgaaattccaggattagttttctttagattctgtcatt 7073830  T
Q  599 aagaaaaa 606  Q
    || |||||    
T  7073829 aaaaaaaa 7073822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 21638302 - 21638253
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacaca 333  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  21638302 ccttacaagatggttttgtaaggatgagttaggccccaaatttcaacaca 21638253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 33879814 - 33879767
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  33879814 ccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 33879767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 33964441 - 33964488
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  33964441 ccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 33964488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 35926284 - 35926237
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  35926284 ccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 35926237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 45403508 - 45403556
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    ||||||||| ||||||||||| |||||||||||||  ||||||||||||    
T  45403508 ccttacaagctggttttgtaaggatgagttaggcctcaaatttcaacac 45403556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 7074197 - 7074127
Alignment:
Q  139 ggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatattcattggttg 210  Q
    |||||||| ||||| |||| |||| |||||||||||| || |||||||||||| || ||||||||| |||||    
T  7074197 ggattaatatcaatattaa-ggcaaccttaggcactgtcagattcatttcctgaatcaatattcataggttg 7074127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 13959470 - 13959517
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||| ||| |||||||||||||| |||||||||||    
T  13959470 ccttacaagctggttttttaaggatgagttaggccccaaatttcaaca 13959517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 19481428 - 19481381
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  19481428 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 19481381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 20735590 - 20735637
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  20735590 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 20735637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 29273102 - 29273055
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  29273102 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29273055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 29273261 - 29273214
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  29273261 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29273214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 52923754 - 52923720
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggcc 318  Q
    ||||||||||||||||||||||||| |||||||||    
T  52923754 ccttacaagttggttttgtaatgattagttaggcc 52923720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 8520129 - 8520080
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacaca 333  Q
    |||||||||  |||||||||| |||||||||| ||| |||||||||||||    
T  8520129 ccttacaagccggttttgtaaagatgagttagaccccaaatttcaacaca 8520080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 33342314 - 33342269
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    |||||||||  |||||||||| |||||||||| |||||||||||||    
T  33342314 ccttacaagccggttttgtaaggatgagttagaccctaaatttcaa 33342269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 8e-20; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 122 - 212
Target Start/End: Original strand, 35497317 - 35497406
Alignment:
Q  122 acgaacataagctaactggattaatctcaatgttaaaggcagccttaggcactgccatattcatttcctggattaatattcattggttgtg 212  Q
    ||||||| ||||||||||||||||| ||||||| |||| ||||||||||||||| || |||||||||||| || ||||||||| |||||||    
T  35497317 acgaacagaagctaactggattaatttcaatgtcaaag-cagccttaggcactgtcagattcatttcctgaatcaatattcatcggttgtg 35497406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 488 - 605
Target Start/End: Original strand, 35497592 - 35497709
Alignment:
Q  488 gaaataactgtcaacgagccatatctgacatctttttccatttctctccaattactcttaccacatccgtaaatgaaatcccaatattagttttctttag 587  Q
    |||| |||||||||  ||||||| ||||||| |||||||| || ||||||| ||   || |||||||||||||||||||||||  ||||| ||||||||     
T  35497592 gaaacaactgtcaaacagccatacctgacatttttttccagttttctccaagtaactttgccacatccgtaaatgaaatcccaggattagctttctttat 35497691  T
Q  588 attccgtcattaagaaaa 605  Q
    |||| ||| |||| ||||    
T  35497692 attctgtcgttaaaaaaa 35497709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 690 - 766
Target Start/End: Original strand, 35497817 - 35497893
Alignment:
Q  690 aacataaaacacacctctctttcctttcgagaaaataacttgaatccagacaacacacttttgggagcatttggatc 766  Q
    |||||||||||||||||||||||| || ||||||| ||| ||||||||||||   | || ||||| |||||||||||    
T  35497817 aacataaaacacacctctctttccatttgagaaaagaacatgaatccagacattcccctcttgggtgcatttggatc 35497893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 18914197 - 18914150
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||||||||||||||  ||||||||||||| |||||||||||    
T  18914197 ccttacaagttggttttgtaagaatgagttaggccccaaatttcaaca 18914150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 285 - 331
Target Start/End: Complemental strand, 40168894 - 40168848
Alignment:
Q  285 cttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||| ||||||||||| |||||||||||||| |||||||||||    
T  40168894 cttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 40168848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 873732 - 873684
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  873732 ccttacaagcaggttttgtaaggatgagttaggccccaaatttcaacac 873684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 13844092 - 13844128
Alignment:
Q  295 ggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||| ||||||||||||||||||||||||||    
T  13844092 ggttttgtaaggatgagttaggccctaaatttcaaca 13844128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 2908805 - 2908758
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  2908805 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 2908758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 3762974 - 3763021
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  3762974 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 3763021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 12965282 - 12965235
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  12965282 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 12965235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 13413652 - 13413699
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  13413652 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 13413699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 13843765 - 13843812
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  13843765 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 13843812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 15287121 - 15287168
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  ||||||||||||||||||||| ||| |||||||||||    
T  15287121 ccttacaagccggttttgtaatgatgagttagacccaaaatttcaaca 15287168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 18914404 - 18914357
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| |||||||||||  ||||||||||||| |||||||||||    
T  18914404 ccttacaagctggttttgtaagaatgagttaggccccaaatttcaaca 18914357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 24994137 - 24994184
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  24994137 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24994184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 34457164 - 34457211
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  34457164 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 34457211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 34457371 - 34457418
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  34457371 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 34457418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 38131832 - 38131879
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  38131832 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 38131879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 40169077 - 40169030
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  40169077 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 40169030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 24918229 - 24918274
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||    
T  24918229 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaa 24918274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 26246004 - 26246037
Alignment:
Q  296 gttttgtaatgatgagttaggccctaaatttcaa 329  Q
    ||||||||| ||||||||||||||||||||||||    
T  26246004 gttttgtaaggatgagttaggccctaaatttcaa 26246037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Complemental strand, 28358071 - 28358026
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||    
T  28358071 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaa 28358026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 20298552 - 20298504
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  20298552 ccttacaagctggttttgtaatgatgagttaggccccaaatttcaacac 20298504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 21085184 - 21085136
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  21085184 ccttacaagctggttttgtaatgatgagttaggccccaaatttcaacac 21085136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 36994063 - 36994023
Alignment:
Q  245 ggcttgctttgtgttggctttgagggggtggagttagtccc 285  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  36994063 ggcttgccttgtgttggctttgagggggtggatttagtccc 36994023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 3183947 - 3183900
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  3183947 ccttacaagccggttttgtaacgatgagttaggccccaaatttcaaca 3183900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 7621962 - 7622009
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  7621962 ccttataagttgattttgtaaggatgagttaggccccaaatttcaaca 7622009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 10989070 - 10989023
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  10989070 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 10989023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 10989277 - 10989230
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  10989277 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 10989230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 16454671 - 16454624
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  16454671 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 16454624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 18905924 - 18905971
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  18905924 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 18905971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 32931469 - 32931516
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  32931469 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 32931516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 36997234 - 36997281
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  36997234 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36997281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 43599379 - 43599426
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  43599379 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 43599426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 33435748 - 33435794
Alignment:
Q  285 cttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| |||||||||| |||||||||| ||| |||||||||||    
T  33435748 cttacaagtcggttttgtaaggatgagttagaccccaaatttcaaca 33435794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 40754513 - 40754559
Alignment:
Q  285 cttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||| ||||||||||| ||| |||||||||| |||||||||||    
T  40754513 cttacaagctggttttgtaaagataagttaggccccaaatttcaaca 40754559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 30066060 - 30066097
Alignment:
Q  294 tggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  30066060 tggttttgtaaggatgagttaggccccaaatttcaaca 30066097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 285
Target Start/End: Original strand, 34248335 - 34248372
Alignment:
Q  248 ttgctttgtgttggctttgagggggtggagttagtccc 285  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  34248335 ttgccttgtgttggctttgagggggtggatttagtccc 34248372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 43599550 - 43599587
Alignment:
Q  294 tggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  43599550 tggttttgtaaggatgagttaggccccaaatttcaaca 43599587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 23821712 - 23821665
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  23821712 ccttacaagttggttttgtaaggatgagttaggccccaaatttcaaca 23821665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 258501 - 258544
Alignment:
Q  288 acaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||    
T  258501 acaagctggttttgtgatgatgagttaggccccaaatttcaaca 258544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 1663640 - 1663593
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  1663640 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1663593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 6783106 - 6783153
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  6783106 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 6783153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 8585159 - 8585206
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||| ||| |||||||||||    
T  8585159 ccttacaagctggttttgtaaggatgagttagaccccaaatttcaaca 8585206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 23396677 - 23396724
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  23396677 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 23396724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 41670901 - 41670948
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  41670901 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 41670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 331
Target Start/End: Original strand, 5775952 - 5775997
Alignment:
Q  286 ttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||| | ||||||| ||||||||||| ||||||||||||||||    
T  5775952 ttacaagctagttttgtgatgatgagttaagccctaaatttcaaca 5775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 329
Target Start/End: Original strand, 29780215 - 29780260
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaa 329  Q
    |||||||||| |||||| ||| |||||||||||||| |||||||||    
T  29780215 ccttacaagtcggttttataaggatgagttaggccccaaatttcaa 29780260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 31761200 - 31761247
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||    
T  31761200 ccttacaagttggttttgtaaggatgagttaggccccaaatttcaaca 31761247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 326
Target Start/End: Complemental strand, 10849527 - 10849485
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaattt 326  Q
    ||||||||||||||||||||| |||||||||||||| ||||||    
T  10849527 ccttacaagttggttttgtaaggatgagttaggccccaaattt 10849485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 23054394 - 23054442
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  23054394 ccttacaagacggttttgtaaggatgagttaggccccaaatttcaacac 23054442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 21214237 - 21214190
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  21214237 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 21214190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 32667251 - 32667298
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  32667251 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 32667298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 33985807 - 33985760
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  33985807 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 33985760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 42768370 - 42768323
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  42768370 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 42768323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 43195852 - 43195899
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  43195852 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 43195899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 21299 - 21252
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||||||||||||| |||||||||||||  |||||||||||    
T  21299 ccttacaagttggttttgtaaggatgagttaggcctcaaatttcaaca 21252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 24558856 - 24558903
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  24558856 ccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 24558903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 26809296 - 26809256
Alignment:
Q  245 ggcttgctttgtgttggctttgagggggtggagttagtccc 285  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  26809296 ggcttgccttgtgttggctttgagggggtggatttagtccc 26809256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 1744878 - 1744831
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  1744878 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 1744831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 16876866 - 16876819
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  16876866 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 16876819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 16877046 - 16876999
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  16877046 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 16876999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 19291954 - 19291907
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||| ||||||||||||||| |||||||||||| | |||||||||||    
T  19291954 ccttataagttggttttgtaaggatgagttaggctccaaatttcaaca 19291907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 19712645 - 19712598
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  19712645 ccttacaagctggttttgtaaggatgagttaggccccaaattacaaca 19712598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 24055145 - 24055098
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  24055145 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 24055098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 28149861 - 28149908
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  28149861 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 28149908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 318
Target Start/End: Complemental strand, 35236542 - 35236508
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggcc 318  Q
    ||||||||||||||||||||||||| |||||||||    
T  35236542 ccttacaagttggttttgtaatgattagttaggcc 35236508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 285 - 330
Target Start/End: Complemental strand, 12124739 - 12124694
Alignment:
Q  285 cttacaagttggttttgtaatgatgagttaggccctaaatttcaac 330  Q
    |||||||| || |||||||| |||||||||||||| ||||||||||    
T  12124739 cttacaagctgattttgtaaggatgagttaggccccaaatttcaac 12124694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 21089189 - 21089152
Alignment:
Q  294 tggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  21089189 tggttttgtaaggatgagttaggccccaaatttcaaca 21089152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 284 - 333
Target Start/End: Complemental strand, 27914362 - 27914313
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacaca 333  Q
    |||||||||  |||||||||| |||||||||||||| ||||||| |||||    
T  27914362 ccttacaagccggttttgtaaggatgagttaggccccaaatttctacaca 27914313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000007; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 990615 - 990662
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||| |||||||||| |||||||||||||| |||||||||||    
T  990615 ccttacaagtcggttttgtaaggatgagttaggccccaaatttcaaca 990662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 29113517 - 29113564
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| |||||||||||    
T  29113517 ccttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 29113564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 32987507 - 32987460
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||| |||||||||| ||||| ||||||||||||||||||||    
T  32987507 ccttacaagtcggttttgtaaggatgatttaggccctaaatttcaaca 32987460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 284 - 330
Target Start/End: Complemental strand, 45426972 - 45426926
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaac 330  Q
    |||||||||| |||||||||| |||||||||||||| ||||||||||    
T  45426972 ccttacaagtcggttttgtaaggatgagttaggccccaaatttcaac 45426926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 284 - 333
Target Start/End: Original strand, 28395245 - 28395294
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacaca 333  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||||    
T  28395245 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaacaca 28395294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 23018538 - 23018586
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  23018538 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 23018586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 284 - 332
Target Start/End: Original strand, 50858080 - 50858128
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||||    
T  50858080 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaacac 50858128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 20545940 - 20545901
Alignment:
Q  292 gttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  20545940 gttgattttgtaatgatgagttaggccccaaatttcaaca 20545901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 29669399 - 29669352
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  29669399 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 29669352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 34206029 - 34205982
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| ||||||||||| || |||||||||||    
T  34206029 ccttacaagctggttttgtaaggatgagttaggtcccaaatttcaaca 34205982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 36558502 - 36558455
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  36558502 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 36558455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Complemental strand, 45427288 - 45427241
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  45427288 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 45427241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 51470551 - 51470598
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  51470551 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 51470598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 52214683 - 52214730
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  52214683 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 52214730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 53740250 - 53740297
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    |||||||||  |||||||||| |||||||||||||| |||||||||||    
T  53740250 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 53740297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 284 - 330
Target Start/End: Original strand, 43972423 - 43972469
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaac 330  Q
    |||||||||  |||||||||| |||||||||||||| ||||||||||    
T  43972423 ccttacaagccggttttgtaaggatgagttaggccccaaatttcaac 43972469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 285 - 331
Target Start/End: Original strand, 50858394 - 50858440
Alignment:
Q  285 cttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||  |||||||||| |||||||||||||| |||||||||||    
T  50858394 cttacaagccggttttgtaaggatgagttaggccccaaatttcaaca 50858440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 15664914 - 15664951
Alignment:
Q  294 tggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||||| |||||||||||||| |||||||||||    
T  15664914 tggttttgtaacgatgagttaggccccaaatttcaaca 15664951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 22865848 - 22865885
Alignment:
Q  295 ggttttgtaatgatgagttaggccctaaatttcaacac 332  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  22865848 ggttttgtaaggatgagttagaccctaaatttcaacac 22865885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 34206122 - 34206085
Alignment:
Q  248 ttgctttgtgttggctttgagggggtggagttagtccc 285  Q
    |||| |||||||||||||||||||||||| ||||||||    
T  34206122 ttgccttgtgttggctttgagggggtggatttagtccc 34206085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 252 - 285
Target Start/End: Original strand, 53739846 - 53739879
Alignment:
Q  252 tttgtgttggctttgagggggtggagttagtccc 285  Q
    ||||||||||||||||||||||||| ||||||||    
T  53739846 tttgtgttggctttgagggggtggatttagtccc 53739879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0989 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0989
Description:

Target: scaffold0989; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 286 - 331
Target Start/End: Complemental strand, 2981 - 2936
Alignment:
Q  286 ttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||| ||||||||||| |||||||||||||| |||||||||||    
T  2981 ttacaagctggttttgtaaggatgagttaggccccaaatttcaaca 2936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 284 - 331
Target Start/End: Original strand, 20608 - 20655
Alignment:
Q  284 ccttacaagttggttttgtaatgatgagttaggccctaaatttcaaca 331  Q
    ||||||||| ||||||||||| |||||||||||||| ||||| |||||    
T  20608 ccttacaagctggttttgtaaggatgagttaggccccaaattacaaca 20655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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