View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1263R-Insertion-12 (Length: 864)
Name: NF1263R-Insertion-12
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263R-Insertion-12 |
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| [»] scaffold0208 (1 HSPs) |
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| [»] scaffold0581 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 645; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 645; E-Value: 0
Query Start/End: Original strand, 8 - 862
Target Start/End: Original strand, 35631248 - 35632118
Alignment:
| Q |
8 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattcatttttatatctaaattcttgatatttaaacttttta |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35631248 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattcatttttatatctaaattcttgatatttaaacttttta |
35631347 |
T |
|
| Q |
108 |
atttgcaaggcttgacttagttttaaatttgaggaggggtgtttgcacataaatgttatattt----------------------actcaattttcacaa |
185 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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| T |
35631348 |
atttgcaaggcttgacttagttttaaatttgaggaggggtgtttgcacataaatgttatatttgagggggtgtgattgatcatttactcatttttcacaa |
35631447 |
T |
|
| Q |
186 |
cttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagnnnnnnnnaagttaaaattaatagttataccatcat |
285 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
35631448 |
cttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagttttttttaagttaaaattaatagttataccatcat |
35631547 |
T |
|
| Q |
286 |
atgcatannnnnnnaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatt |
385 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35631548 |
atgcatattttttaaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatactttatcttgtgaatatt |
35631647 |
T |
|
| Q |
386 |
tatatggcaacaaactcatattgttcaagaaaagctagtaacaaactccttttgctattgaaaggaaacaccattatagag--tatctcaaatgatgcaa |
483 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35631648 |
tatatggcaacaaactcatattgttcaagaaaagctagtaacaaactccttttgctattgaaaggaaacaccattatagagagtatctcaaatgatgcaa |
35631747 |
T |
|
| Q |
484 |
ccaagaactgaaatagcagatgttgaatcaaatacaatgatcaagtttaggaaacaatgaaattaattaccatttccaacatattaattcagacatgaga |
583 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35631748 |
ccaagaactgaaatagcagatgttgaatcaaattcaatgatcaagtttaggaaacaatgaaattaattaccatttccaacatattaattcagacatgaga |
35631847 |
T |
|
| Q |
584 |
tataaatttaaaggtgcaagtaaaatgttcaaaattaacaacatttgaataatgtaaaaatagtataaagcatttcagaatacatttgaacttccatttc |
683 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
35631848 |
tataaatttaaaggtgcaagtaaaatgttcaaaattaacaacatttgaataatgtaaaaatagtataaagcatttcaaaatacatttgaacttccatttc |
35631947 |
T |
|
| Q |
684 |
ataaacaaggcagaagcacacaattttatttgc--acagatataataaatgtatcacataaaactgccacttctagaatctaatttggtgagtgaataga |
781 |
Q |
| |
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| ||||||||||||||||||||||||||||||| ||||| ||||||||||||| | | || |||||| |||||||| |||||||||||| |
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| T |
35631948 |
acaaacaaggcagaagcacacaattttatttgctaacagacataataaatgtat--------attagca---ctagaacctaatttgatgagtgaataga |
35632036 |
T |
|
| Q |
782 |
aaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacag-ttacattctaaatttaaatttatat |
862 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
35632037 |
aaaacatccaaccaatagagttaacagatctcaatggctgaaataagttagaacagtttacattctaaattgaaatttatat |
35632118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 729 - 837
Target Start/End: Original strand, 35635307 - 35635418
Alignment:
| Q |
729 |
aatgtatcacataaaactgccacttctagaatctaatttggtg---agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaat |
825 |
Q |
| |
|
||||||||||||||||||| | ||||||||| |||||||| | |||||| |||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
35635307 |
aatgtatcacataaaactgtcgcttctagaacctaatttgatatgcagtgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaagg |
35635406 |
T |
|
| Q |
826 |
aagttagaacag |
837 |
Q |
| |
|
|||||| ||||| |
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| T |
35635407 |
aagttataacag |
35635418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 729 - 837
Target Start/End: Original strand, 10571628 - 10571739
Alignment:
| Q |
729 |
aatgtatcacataaaactgccacttctagaatctaatttggtgag---tgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaat |
825 |
Q |
| |
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||||||||| ||||||||| ||||||||||| |||||||| | | |||| |||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
10571628 |
aatgtatcagataaaactgtcacttctagaacctaatttgatatgcattgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaagg |
10571727 |
T |
|
| Q |
826 |
aagttagaacag |
837 |
Q |
| |
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|||||| ||||| |
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| T |
10571728 |
aagttataacag |
10571739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 10571328 - 10571388
Alignment:
| Q |
470 |
ctcaaatgatgcaaccaagaactgaaatagcagatgttgaatcaaatacaatgatcaagtt |
530 |
Q |
| |
|
||||||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
10571328 |
ctcaaatgatgcaaccaagaattaaaatagaagatgttgaatcaaattcaatgattaagtt |
10571388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 470 - 530
Target Start/End: Original strand, 35635008 - 35635068
Alignment:
| Q |
470 |
ctcaaatgatgcaaccaagaactgaaatagcagatgttgaatcaaatacaatgatcaagtt |
530 |
Q |
| |
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||||||||||||||||||||| | |||||| |||||||||||||||| ||||||| ||||| |
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|
| T |
35635008 |
ctcaaatgatgcaaccaagaattaaaatagaagatgttgaatcaaattcaatgattaagtt |
35635068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 628 - 705
Target Start/End: Original strand, 35634766 - 35634843
Alignment:
| Q |
628 |
ttgaataatgtaaaaatagtataaagcatttcagaatacatttgaacttccatttcataaacaaggcagaagcacaca |
705 |
Q |
| |
|
|||| |||| |||||| |||||| ||||||||||||||| |||| |||| |||||| |||||||||| || |||||| |
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|
| T |
35634766 |
ttgagtaatttaaaaacagtatacagcatttcagaatacttttgcactttcatttccaaaacaaggcacaaccacaca |
35634843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 8 - 126
Target Start/End: Original strand, 16955984 - 16956103
Alignment:
| Q |
8 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattca-tttttatatctaaattcttgatatttaaacttttt |
106 |
Q |
| |
|
||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| | |
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| T |
16955984 |
acttgcagctatcctttttgtataactgacgtccaatcctttaaatcaaatcacagagaattcattttttatatctaaatttgagatgtttaaactttgt |
16956083 |
T |
|
| Q |
107 |
aatttgcaaggcttgactta |
126 |
Q |
| |
|
|||||| |||||||| |||| |
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|
| T |
16956084 |
aatttgtaaggcttggctta |
16956103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 303 - 389
Target Start/End: Complemental strand, 10300272 - 10300186
Alignment:
| Q |
303 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatttata |
389 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||| | ||| ||| |||||||||| |
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|
| T |
10300272 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagagattcaatcatagtctatgctgtaaatatttata |
10300186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 10320708 - 10320638
Alignment:
| Q |
303 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttat |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| |
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|
| T |
10320708 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagaaaatcaatcatagtttat |
10320638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0208 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0208
Description:
Target: scaffold0208; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 729 - 837
Target Start/End: Complemental strand, 15381 - 15270
Alignment:
| Q |
729 |
aatgtatcacataaaactgccacttctagaatctaatttggtg---agtgaatagaaaaacatccaaccaatagagttaacagatctcaatggctgaaat |
825 |
Q |
| |
|
|||||||| |||||||||| ||||||||||| |||||||| | |||||| |||||||||| |||||||||||||||||| |||||||||| |||| |
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| T |
15381 |
aatgtatcgcataaaactgtcacttctagaacctaatttgatatgcagtgaaaagaaaaacattcaaccaatagagttaacaaatctcaatggttgaagg |
15282 |
T |
|
| Q |
826 |
aagttagaacag |
837 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
15281 |
aagttataacag |
15270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0581 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0581
Description:
Target: scaffold0581; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 734 - 817
Target Start/End: Original strand, 2610 - 2696
Alignment:
| Q |
734 |
atcacataaaactgccacttctagaatctaatttggtg---agtgaatagaaaaacatccaaccaatagagttaacagatctcaatg |
817 |
Q |
| |
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|||||||||||||| ||||||||||| ||||| || | |||||| || ||||||| |||||||||||||||||| ||||||||| |
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|
| T |
2610 |
atcacataaaactgtcacttctagaacctaatatgatatgcagtgaaaagtaaaacattcaaccaatagagttaacaaatctcaatg |
2696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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