View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263R-Insertion-14 (Length: 942)

Name: NF1263R-Insertion-14
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263R-Insertion-14
NF1263R-Insertion-14
[»] chr3 (8 HSPs)
chr3 (652-942)||(27780617-27780903)
chr3 (769-934)||(27784621-27784785)
chr3 (25-96)||(27765822-27765893)
chr3 (390-474)||(37416473-37416556)
chr3 (394-471)||(37414996-37415072)
chr3 (24-65)||(27782439-27782480)
chr3 (407-443)||(40241759-40241795)
chr3 (390-436)||(14745235-14745281)
[»] chr7 (13 HSPs)
chr7 (384-473)||(10957183-10957271)
chr7 (390-479)||(43442798-43442886)
chr7 (390-476)||(26135637-26135722)
chr7 (390-475)||(10955842-10955926)
chr7 (390-473)||(43441345-43441427)
chr7 (390-477)||(669423-669509)
chr7 (418-475)||(2414746-2414802)
chr7 (390-474)||(26146742-26146825)
chr7 (397-475)||(8426928-8427005)
chr7 (390-436)||(35295734-35295780)
chr7 (390-436)||(44372764-44372810)
chr7 (390-436)||(44381620-44381666)
chr7 (414-443)||(44554825-44554854)
[»] chr5 (14 HSPs)
chr5 (384-475)||(28702566-28702656)
chr5 (390-484)||(10735751-10735844)
chr5 (392-476)||(35081474-35081557)
chr5 (392-475)||(4127290-4127372)
chr5 (390-471)||(10736973-10737053)
chr5 (390-474)||(41144553-41144636)
chr5 (390-479)||(1102611-1102699)
chr5 (406-475)||(1104019-1104087)
chr5 (390-474)||(4124754-4124838)
chr5 (399-474)||(35047417-35047491)
chr5 (390-476)||(11797568-11797653)
chr5 (392-476)||(13519469-13519551)
chr5 (274-312)||(11113065-11113103)
chr5 (390-476)||(41143236-41143321)
[»] chr4 (11 HSPs)
chr4 (384-475)||(35350137-35350227)
chr4 (387-476)||(39057799-39057887)
chr4 (394-475)||(26631258-26631338)
chr4 (390-471)||(36846594-36846674)
chr4 (390-474)||(35348795-35348878)
chr4 (390-474)||(26629789-26629872)
chr4 (390-477)||(1521229-1521315)
chr4 (390-474)||(1519809-1519892)
chr4 (390-474)||(39056423-39056506)
chr4 (406-474)||(36845407-36845474)
chr4 (390-445)||(37106285-37106340)
[»] chr1 (10 HSPs)
chr1 (390-477)||(48527529-48527615)
chr1 (390-474)||(48528932-48529015)
chr1 (390-471)||(7306290-7306370)
chr1 (390-474)||(26287819-26287902)
chr1 (390-474)||(26286410-26286493)
chr1 (390-476)||(5613120-5613205)
chr1 (394-474)||(5611724-5611803)
chr1 (390-474)||(7304810-7304893)
chr1 (390-475)||(12665788-12665872)
chr1 (414-443)||(48492757-48492786)
[»] chr2 (10 HSPs)
chr2 (390-475)||(1149223-1149307)
chr2 (390-474)||(1309396-1309479)
chr2 (390-474)||(1147747-1147830)
chr2 (390-474)||(1310703-1310786)
chr2 (420-477)||(8320777-8320833)
chr2 (384-475)||(102385-102475)
chr2 (390-445)||(25561694-25561749)
chr2 (390-474)||(25559280-25559363)
chr2 (390-474)||(40556938-40557021)
chr2 (416-445)||(40559170-40559199)
[»] chr8 (11 HSPs)
chr8 (390-474)||(31844366-31844449)
chr8 (390-473)||(43202095-43202177)
chr8 (392-479)||(24306162-24306248)
chr8 (390-474)||(31845829-31845912)
chr8 (406-475)||(43203331-43203399)
chr8 (390-479)||(28291288-28291376)
chr8 (390-436)||(28291400-28291446)
chr8 (390-476)||(38697864-38697949)
chr8 (390-445)||(17455073-17455128)
chr8 (416-479)||(42835853-42835915)
chr8 (390-436)||(20180709-20180755)
[»] chr6 (11 HSPs)
chr6 (390-488)||(11968512-11968609)
chr6 (390-475)||(30231475-30231559)
chr6 (390-478)||(30232941-30233028)
chr6 (390-476)||(136623-136708)
chr6 (390-474)||(138241-138324)
chr6 (390-474)||(146262-146345)
chr6 (388-471)||(11967249-11967331)
chr6 (396-476)||(35037129-35037208)
chr6 (822-885)||(2162786-2162849)
chr6 (787-884)||(2168950-2169047)
chr6 (787-884)||(2180583-2180680)
[»] scaffold0219 (1 HSPs)
scaffold0219 (390-475)||(8225-8309)
[»] scaffold0092 (1 HSPs)
scaffold0092 (399-471)||(39825-39896)
[»] scaffold0286 (1 HSPs)
scaffold0286 (822-885)||(14255-14318)
[»] scaffold0148 (1 HSPs)
scaffold0148 (413-443)||(15908-15938)
[»] scaffold0141 (1 HSPs)
scaffold0141 (397-471)||(9860-9933)


Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-101; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 652 - 942
Target Start/End: Original strand, 27780617 - 27780903
Alignment:
Q  652 tttctacaaaccttgcaatattacataatcataagtatttggaggggtagctgccacttctcccaaatacacaatttcattttcaggaaataaaacatat 751  Q
    |||||||||||  |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27780617 tttctacaaacaatgcaatgttacagaatcataagtatttggaggggtagctgccacttctcccaaatacacaatttcattttaaggaaataaaacatat 27780716  T
Q  752 tatacgcacactctttattattacatagttaatacacttcaggggaagtcgtaagctcctatagcatactgcttaatctttgtatcatcattcatgaagt 851  Q
     ||||  ||| ||| | |||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27780717 gatac--acattctat-ttattacatagtgaatacatttcaggggaaatcataagctcctatagcatactgcttaatctttgtatcatcattcatgaagt 27780813  T
Q  852 tcgcgagtgctgaagtgtatgaagatcccttaattctttttatactcattccaccaacgaatgtagctgcttcgtgccagaaaaatatctg 942  Q
    |||| |||||||||||||||||| ||||||||||| | ||||||||| |||||||||||||| |||||||||  |||||||||||||||||    
T  27780814 tcgctagtgctgaagtgtatgaaaatcccttaatt-tctttatactcgttccaccaacgaatatagctgctttttgccagaaaaatatctg 27780903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 769 - 934
Target Start/End: Original strand, 27784621 - 27784785
Alignment:
Q  769 ttattacatagttaatacacttcaggggaagtcgtaagctcctatagcatactgcttaatctttgtatcatcattcatgaagttcgcgagtgctgaagtg 868  Q
    |||||||||||| |||||| |||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  27784621 ttattacatagtaaatacatttcaggggaaatcataagctcctatagcatactgcttaatctttgtatcatcgttcatgaagttcgcaagtgctgaagtg 27784720  T
Q  869 tatgaagatcccttaattctttttatactcattccaccaacgaatgtagctgcttcgtgccagaaa 934  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  27784721 tatgaagatcccttaatt-tttttatactcattccaccaacgaatatagctgcttcgtgcaagaaa 27784785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 27765822 - 27765893
Alignment:
Q  25 taatctgcattaagattgttacataagggattgcagggaaagataagcctagatacatagtatgatatgagt 96  Q
    ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  27765822 taatctgcattaagattgttacatacgggattgcagggaaagagaagcctagatacatagtatgatatgagt 27765893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 37416473 - 37416556
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||| || |||||||||||| |||||||||||    
T  37416473 agggaccaaaatgttgattttatgagttatggaaccaaaatgaaaacaacaaattac-ttaggggaccaaaaggccaattaagcc 37416556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 394 - 471
Target Start/End: Complemental strand, 37415072 - 37414996
Alignment:
Q  394 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| ||  ||||||||||||| ||||||    
T  37415072 accaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattac-ttaagggaccaaaagtctaattaa 37414996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 27782439 - 27782480
Alignment:
Q  24 ttaatctgcattaagattgttacataagggattgcagggaaa 65  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  27782439 ttaatctgcattaacattgttacataagcgattgcagggaaa 27782480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 407 - 443
Target Start/End: Original strand, 40241759 - 40241795
Alignment:
Q  407 ttttacgagttatgggaccaaaatgaaaacaacaaat 443  Q
    ||||| |||||||||||||||||||||||||||||||    
T  40241759 ttttaagagttatgggaccaaaatgaaaacaacaaat 40241795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 14745235 - 14745281
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    ||||||||||||||| | |||||||||||||||||||| ||| ||||    
T  14745235 agggaccaaaacgttgactttacgagttatgggaccaagatgtaaac 14745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 8e-36; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 10957183 - 10957271
Alignment:
Q  384 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagc 473  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||    
T  10957183 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattac-ttaggggaccaaaagtccaattaagc 10957271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 390 - 479
Target Start/End: Original strand, 43442798 - 43442886
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaat 479  Q
    ||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||| |||||||    
T  43442798 agggaccaaaatgttgattttacgagttatgggaccaatatgaaaacaacaaattac-ttaggggaccaaaagttcaattaaacctaaat 43442886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 390 - 476
Target Start/End: Complemental strand, 26135722 - 26135637
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||||||| ||||||  |||||||||||||||||||||||| |||||||  || ||||||||||||||||||||||||||    
T  26135722 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaatta-gttaggggaccaaaagtccaattaagccta 26135637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 10955926 - 10955842
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    |||||| |||||||| ||||||  |||||||| | |||||||||||||||||||||| ||  ||||||||||||||||||||||||    
T  10955926 agggactaaaacgttgattttataagttatggaatcaaaatgaaaacaacaaattac-ttaagggaccaaaagtccaattaagcct 10955842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 43441427 - 43441345
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagc 473  Q
    |||||||||||  ||||||||| |||||||| |||||||||||||||||||| |||| || ||||||||||| ||||| |||||    
T  43441427 agggaccaaaatattaattttatgagttatgagaccaaaatgaaaacaacaatttac-ttaggggaccaaaaatccaactaagc 43441345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 669423 - 669509
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaa 477  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||||    |||||| || ||||||||||| |||||||||||||||    
T  669423 agggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattac-ttaggggaccaaaaatccaattaagcctaa 669509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 418 - 475
Target Start/End: Complemental strand, 2414802 - 2414746
Alignment:
Q  418 atgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    |||||| |||||||||||||| ||||||| ||| ||||||||||||||||||||||||    
T  2414802 atgggagcaaaatgaaaacaagaaattac-ttgagggaccaaaagtccaattaagcct 2414746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 26146742 - 26146825
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||| |||| || ||||||  | |||| ||| |||||||||||||||||||||  || ||||||||||||||||||||||||    
T  26146742 agggaccgaaacattgattttaaaatttataggatcaaaatgaaaacaacaaatta-gttaggggaccaaaagtccaattaagcc 26146825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 397 - 475
Target Start/End: Original strand, 8426928 - 8427005
Alignment:
Q  397 aaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    |||||| | |||||||||| |||  ||||||||||||||||  |||||| ||| |||||| ||||||||||||||||||    
T  8426928 aaaacgatgattttacgagctataagaccaaaatgaaaacatgaaatta-attaggggactaaaagtccaattaagcct 8427005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 35295780 - 35295734
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    |||||| |||||||| | |||||||||||||||||||||||| ||||    
T  35295780 agggactaaaacgttgactttacgagttatgggaccaaaatgtaaac 35295734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 44372810 - 44372764
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    ||||||||||| | |||||||| |||||||| |||||||||||||||    
T  44372810 agggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44372764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 436
Target Start/End: Complemental strand, 44381666 - 44381620
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    ||||||||||| | |||||||| |||||||| |||||||||||||||    
T  44381666 agggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 44381620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 443
Target Start/End: Original strand, 44554825 - 44554854
Alignment:
Q  414 agttatgggaccaaaatgaaaacaacaaat 443  Q
    ||||||||||||||||||||||||||||||    
T  44554825 agttatgggaccaaaatgaaaacaacaaat 44554854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 1e-34; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 384 - 475
Target Start/End: Complemental strand, 28702656 - 28702566
Alignment:
Q  384 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||||||||    
T  28702656 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattac-ttaggggacaaaaagtccaattaagcct 28702566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 390 - 484
Target Start/End: Complemental strand, 10735844 - 10735751
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaatgtttt 484  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||||||||||||| ||||    
T  10735844 agggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaagtaattac-ttaggggaccaaaagtccaattaagcctaaatttttt 10735751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 392 - 476
Target Start/End: Original strand, 35081474 - 35081557
Alignment:
Q  392 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||  |||||| || ||||||||||||||||||||||||||    
T  35081474 ggaccaaaacgttgattttacgagttatgggaccaaaatgaaaacaaacaattac-ttaggggaccaaaagtccaattaagccta 35081557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 392 - 475
Target Start/End: Original strand, 4127290 - 4127372
Alignment:
Q  392 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||  ||||||||||||||    
T  4127290 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattac-ttagaggaccaagggtccaattaagcct 4127372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 390 - 471
Target Start/End: Original strand, 10736973 - 10737053
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||    
T  10736973 agggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaagaaattac-ttaggggaccaaaagtccaattaa 10737053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 41144553 - 41144636
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||||||| ||||||  | |||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||    
T  41144553 agggaccaaaacgttgattttagaatttatgggaccaaaatgaaaacaacaaatta-attaggggaccaaaaatccaattaagcc 41144636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 1102699 - 1102611
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaat 479  Q
    ||||||| ||| ||| |||||||||||||||||||||| ||| |||||||||||||  ||  ||||||||||||||||||||||||||||    
T  1102699 agggacctaaatgttgattttacgagttatgggaccaatatgtaaacaacaaatta-gttatgggaccaaaagtccaattaagcctaaat 1102611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 1104019 - 1104087
Alignment:
Q  406 attttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||||||| ||||||  ||||||||||||| || |||||||||||||||||||||||||    
T  1104019 attttacgagttatgggactaaaatgttaacaacaaattac-ttaggggaccaaaagtccaattaagcct 1104087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 4124838 - 4124754
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||||||| |||||| || |||||| |||||||||||||||| |||||   || | ||||||||||||||||||||||    
T  4124838 agggaccaaaacgttgattttatgaattatggaaccaaaatgaaaacaagaaatttacttagaggaccaaaagtccaattaagcc 4124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 399 - 474
Target Start/End: Complemental strand, 35047491 - 35047417
Alignment:
Q  399 aacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||| ||||||||||||||||||||||||||||||||  |||| || || ||||| ||||| ||||||||||||    
T  35047491 aacgttgattttacgagttatgggaccaaaatgaaaacacgaaataac-ttaggggatcaaaaatccaattaagcc 35047417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 11797568 - 11797653
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||| ||| ||||||||||||||| |||||||||| ||||    |||||  || |||||||||| |||||||||||||||    
T  11797568 agggaccaaaatgttgattttacgagttatgagaccaaaatgtaaactcataatta-tttaggggaccaaatgtccaattaagccta 11797653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 392 - 476
Target Start/End: Complemental strand, 13519551 - 13519469
Alignment:
Q  392 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||| ||| ||||| ||||||||||||| |||||| |||||| |||||  | |  |||| ||||||||||||||||||||    
T  13519551 ggaccaaaatgttgatttttcgagttatgggactaaaatgtaaacaagaaatt--agttagggaacaaaagtccaattaagccta 13519469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 274 - 312
Target Start/End: Original strand, 11113065 - 11113103
Alignment:
Q  274 atatttttaaggacgaaaaacatatttaaccctttttaa 312  Q
    |||||| ||||||| ||||||||||||||||||||||||    
T  11113065 atatttataaggaccaaaaacatatttaaccctttttaa 11113103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 476
Target Start/End: Complemental strand, 41143321 - 41143236
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||| ||| ||||||  | ||||| ||||||||| ||||||||||||||  || | ||| ||| ||||||||||||||||    
T  41143321 agggaccaaaatgttgattttagaacttatgagaccaaaataaaaacaacaaatta-gttagaggatcaagagtccaattaagccta 41143236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 3e-32; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 35350137 - 35350227
Alignment:
Q  384 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| || |||||||||||||||||||||||||    
T  35350137 ttttttagggaccaaaacgttaattttacgagttatgagatcaaaatgaaaacaacaaattac-ttaggggaccaaaagtccaattaagcct 35350227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 387 - 476
Target Start/End: Original strand, 39057799 - 39057887
Alignment:
Q  387 tttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||| || ||||||||||||||||||||||||||    
T  39057799 tttagggaccaaaacgttaattttacgagttataggacaaaaataaaaacaacaaattac-ttaggggaccaaaagtccaattaagccta 39057887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 394 - 475
Target Start/End: Original strand, 26631258 - 26631338
Alignment:
Q  394 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||| ||| ||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  26631258 accaaaatgttgattttacgagttatgagaccaaaatgaaaataacaaattac-ttgggggaccaaaagtccaattaagcct 26631338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 390 - 471
Target Start/End: Original strand, 36846594 - 36846674
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||    
T  36846594 agggaccaaaatgttgattttacgagttatgggaccaaaatgaaaacaacaaattac-ttagggggccaaaagtccaattaa 36846674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 35348878 - 35348795
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  35348878 agggactaaaacgttgattttacaagttatgggaccaaaatgaaaacaacaaattac-ttaagggaccaaaagtccaattaagcc 35348795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 26629872 - 26629789
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||| ||  |||||||||||||||||||||||    
T  26629872 agggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttac-ttaagggaccaaaagtccaattaagcc 26629789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 390 - 477
Target Start/End: Original strand, 1521229 - 1521315
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaa 477  Q
    ||||||||||| ||| ||||||||| |||||||| |||||||||||||||||||||  || | |||||||||||||||||||||||||    
T  1521229 agggaccaaaatgttgattttacgaattatgggatcaaaatgaaaacaacaaatta-gttagaggaccaaaagtccaattaagcctaa 1521315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 1519892 - 1519809
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||    
T  1519892 agggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaatta-gttaggggaccaaaagtccaattaagcc 1519809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 39056506 - 39056423
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||| |||||||| ||||||| | ||||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  39056506 agggactaaaacgttgattttacaaattatgagaccaaaatgaaaacaacaaattac-ttaagggaccaaaagtccaattaagcc 39056423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 406 - 474
Target Start/End: Complemental strand, 36845474 - 36845407
Alignment:
Q  406 attttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||| ||||||||| || |||||||||||||||| ||||  | || |||||||||||||||||||||    
T  36845474 attttatgagttatggaactaaaatgaaaacaacaatttac-ctaggtgaccaaaagtccaattaagcc 36845407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 37106285 - 37106340
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaatta 445  Q
    |||||||||| |||| ||||||  | ||||||||||||||| ||||||||||||||    
T  37106285 agggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaatta 37106340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 2e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 390 - 477
Target Start/End: Complemental strand, 48527615 - 48527529
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaa 477  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||| |||||||||||||||    
T  48527615 agggaccaaaatgttaattttacgagttatgggaccaaaatgtaaacaacaaattac-ttaggggaccaaaaatccaattaagcctaa 48527529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 48528932 - 48529015
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  48528932 agggactaaaatgttgattttacgagttatgggaccaaaatgtaaacaacaaattac-ttgggggaccaaaagtccaattaagcc 48529015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 390 - 471
Target Start/End: Original strand, 7306290 - 7306370
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||  || |||||||||||||||||    
T  7306290 agggaccaaaatgttaattttacgagttataggaccaaaatgaaaacaacaaattac-ttaaggaaccaaaagtccaattaa 7306370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 26287819 - 26287902
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||    
T  26287819 agggaccaaaatgttgattttacgaattatgggaccaaaatgaaaacaacaaatta-gttagaggaccaaaagtccaattaagcc 26287902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 26286493 - 26286410
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||| ||||||||  || ||||||||||||||||||||||||    
T  26286493 agggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaatta-gttaggggaccaaaagtccaattaagcc 26286410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 390 - 476
Target Start/End: Original strand, 5613120 - 5613205
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||| | ||| ||||||||| ||||||||||||||||||||| ||||||||  || ||||| ||||||||||||||||||||    
T  5613120 agggaccaatatgttgattttacgaattatgggaccaaaatgaaaacgacaaatta-gttaggggatcaaaagtccaattaagccta 5613205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 5611803 - 5611724
Alignment:
Q  394 accaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||| ||| ||||||| | ||||||||||||||||||||||||||||||  ||   ||||||||||||||||||||||    
T  5611803 accaaaatgttgattttacaaattatgggaccaaaatgaaaacaacaaatta-gttaaaggaccaaaagtccaattaagcc 5611724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 7304893 - 7304810
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||||||||  || |||||||||||||||||| || ||||||||||||||||||  || ||| ||||| ||||||||||||||    
T  7304893 agggaccaaaatattgattttacgagttatgggatcacaatgaaaacaacaaatta-tttcgggaaccaagagtccaattaagcc 7304810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 12665872 - 12665788
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||| ||| ||| ||||||||| ||||||||||||||| |||||    |||||| || ||||||||||| || ||||||||||    
T  12665872 agggaccgaaatgttgattttacgaattatgggaccaaaataaaaactgataattac-ttaggggaccaaaaatcaaattaagcct 12665788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 414 - 443
Target Start/End: Complemental strand, 48492786 - 48492757
Alignment:
Q  414 agttatgggaccaaaatgaaaacaacaaat 443  Q
    ||||||||||||||||||||||||||||||    
T  48492786 agttatgggaccaaaatgaaaacaacaaat 48492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 7e-24; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 7e-24
Query Start/End: Original strand, 390 - 475
Target Start/End: Original strand, 1149223 - 1149307
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||    
T  1149223 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaatta-gttaggggaccaaaagtccaattaagcct 1149307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 1309479 - 1309396
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  1309479 agggaccaaaatgttaattttacgagttatatgactaaaatgaaaacaacaaattac-ttaggggaccaaaaatccaattaagcc 1309396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 1147830 - 1147747
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||| ||||||| ||||||  ||||||||||| ||||||||||||||||||||  || ||||||||||||||||||||||||    
T  1147830 agggaccgaaacgttgattttagaagttatgggactaaaatgaaaacaacaaatta-gttaggggaccaaaagtccaattaagcc 1147747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 1310703 - 1310786
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||| ||||||||||||||| ||  ||||||||||||||||||||| || |||||||   ||||||||||||||    
T  1310703 agggaccaaaatgttgattttacgagttatgagattaaaatgaaaacaacaaattac-ttcggggaccttgagtccaattaagcc 1310786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 420 - 477
Target Start/End: Complemental strand, 8320833 - 8320777
Alignment:
Q  420 gggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaa 477  Q
    |||||||||||| |||||| ||||||| || |||||||||||||||||||||||||||    
T  8320833 gggaccaaaatgtaaacaagaaattac-ttaggggaccaaaagtccaattaagcctaa 8320777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 384 - 475
Target Start/End: Original strand, 102385 - 102475
Alignment:
Q  384 ttttttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    |||||||||||||||||||    ||||  |||||||||||||||||||||||||| ||||||  || |||||||||| |  |||||||||||    
T  102385 ttttttagggaccaaaacggacgttttgggagttatgggaccaaaatgaaaacaagaaatta-gttaggggaccaaatgatcaattaagcct 102475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 390 - 445
Target Start/End: Original strand, 25561694 - 25561749
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaatta 445  Q
    |||||||||| |||| ||||||  | ||||||||||||||||||||||||||||||    
T  25561694 agggaccaaatcgttgattttagaatttatgggaccaaaatgaaaacaacaaatta 25561749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 25559363 - 25559280
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||||||| |||| ||||||  | ||||||||||||||| ||||||||||||||  || ||||||||||  || |||||||||    
T  25559363 agggaccaaatcgttgattttagaacttatgggaccaaaataaaaacaacaaatta-gttaggggaccaaatatcgaattaagcc 25559280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 40557021 - 40556938
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    |||||||||| |||| ||||||  | ||||| |||||||||||||||||||||||| ||| | ||||||||  || |||||||||    
T  40557021 agggaccaaatcgttgattttagaacttatgagaccaaaatgaaaacaacaaatta-attagaggaccaaatatcaaattaagcc 40556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 416 - 445
Target Start/End: Original strand, 40559170 - 40559199
Alignment:
Q  416 ttatgggaccaaaatgaaaacaacaaatta 445  Q
    ||||||||||||||||||||||||||||||    
T  40559170 ttatgggaccaaaatgaaaacaacaaatta 40559199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 390 - 474
Target Start/End: Complemental strand, 31844449 - 31844366
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  31844449 agggaccaaaatgttaattttacgagttacgggactaaaatgaaaacaacaaattac-tttagggaccaaaagtccaattaagcc 31844366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 43202177 - 43202095
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagc 473  Q
    ||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  43202177 agggaccaaaatgttgattttacgagttatgggactaaaatgaaaacaacaaattac-ttaggggatcaaaagtccaattaagc 43202095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 392 - 479
Target Start/End: Original strand, 24306162 - 24306248
Alignment:
Q  392 ggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaat 479  Q
    |||||||||  || ||||||||||||||||||||||||||||||||| ||||||| || ||| ||||||||||| |||||||||||||    
T  24306162 ggaccaaaatattgattttacgagttatgggaccaaaatgaaaacaagaaattac-ttagggaaccaaaagtcctattaagcctaaat 24306248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 31845829 - 31845912
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||||||| ||| |||||| ||||||||||||||||||||||||||||| |||| ||  |||||||||| ||||||||||||    
T  31845829 agggaccaaaatgttgattttatgagttatgggaccaaaatgaaaacaacaatttac-ttaagggaccaaaactccaattaagcc 31845912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 406 - 475
Target Start/End: Original strand, 43203331 - 43203399
Alignment:
Q  406 attttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    |||||||||||||||||||||||||||||| |||||||||  ||   |||||||||||||||||||||||    
T  43203331 attttacgagttatgggaccaaaatgaaaataacaaatta-tttaatggaccaaaagtccaattaagcct 43203399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 390 - 479
Target Start/End: Complemental strand, 28291376 - 28291288
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaat 479  Q
    ||||||| ||| ||| ||||||||| |||||||||||||||||||||    |||||| || ||||||||||| |||||||||||| ||||    
T  28291376 agggaccgaaatgttgattttacgaattatgggaccaaaatgaaaactgataattac-ttaggggaccaaaaatccaattaagccaaaat 28291288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 28291400 - 28291446
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    ||||||| ||| ||||||||||||||||||||||||||| |||||||    
T  28291400 agggaccgaaatgttaattttacgagttatgggaccaaagtgaaaac 28291446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 390 - 476
Target Start/End: Complemental strand, 38697949 - 38697864
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||| ||| ||||||| |||||||| ||||||||| ||| |  ||||||| || ||||||||||||  ||||||||||||    
T  38697949 agggaccaaaatgttgattttacaagttatggaaccaaaatgtaaatagaaaattac-ttaggggaccaaaagatcaattaagccta 38697864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 17455128 - 17455073
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaatta 445  Q
    ||||||||||| ||| ||||||| | ||||| ||||||||||||||||| ||||||    
T  17455128 agggaccaaaaagttgattttacaaattatgtgaccaaaatgaaaacaaaaaatta 17455073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 42835915 - 42835853
Alignment:
Q  416 ttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaat 479  Q
    ||||||||||||||| |||||||||||| | | || ||||||||| || |||||||||||||||    
T  42835915 ttatgggaccaaaataaaaacaacaaataaga-tgagggaccaaaggttcaattaagcctaaat 42835853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 20180709 - 20180755
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaac 436  Q
    ||||||||||| | |||||||| |||||||| |||||||||||||||    
T  20180709 agggaccaaaatgataattttaagagttatgagaccaaaatgaaaac 20180755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 4e-22; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 390 - 488
Target Start/End: Original strand, 11968512 - 11968609
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaatgtttttata 488  Q
    |||||||||||||||||||||||  |||||| ||||||||||||||||||||||||  || ||||||||||| ||||||||||| ||||| ||| ||||    
T  11968512 agggaccaaaacgttaattttacaggttatgagaccaaaatgaaaacaacaaatta-gttaggggaccaaaaatccaattaagcttaaatttttatata 11968609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 390 - 475
Target Start/End: Complemental strand, 30231559 - 30231475
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||||||| ||||||  ||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||    
T  30231559 agggaccaaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaatta-gttaagggaccaaaagtccaattaagcct 30231475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 390 - 478
Target Start/End: Original strand, 30232941 - 30233028
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcctaaa 478  Q
    ||||||| ||||||| ||||||  ||||||||||||||||||||||||||||| ||  || ||||||||||||||||||||||||||||    
T  30232941 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacaacaaacta-gttaggggaccaaaagtccaattaagcctaaa 30233028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 390 - 476
Target Start/End: Complemental strand, 136708 - 136623
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||||||||| ||||||  ||||||||||| ||||| ||||||||||||||  || |||||| |||||||||||||||||||    
T  136708 agggaccaaaacgttgattttaaaagttatgggactaaaataaaaacaacaaatta-gttaggggacgaaaagtccaattaagccta 136623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 138241 - 138324
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||| ||||||| ||||||  |||||||||||||||||||||||| |||||||  || |||||||||||||| |||||||||    
T  138241 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaatta-gttaggggaccaaaagtcaaattaagcc 138324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 390 - 474
Target Start/End: Original strand, 146262 - 146345
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcc 474  Q
    ||||||| ||||||| ||||||  |||||||||||||||||||||||| |||||||  || |||||||||||||| |||||||||    
T  146262 agggaccgaaacgttgattttagaagttatgggaccaaaatgaaaacatcaaatta-gttaggggaccaaaagtcaaattaagcc 146345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 388 - 471
Target Start/End: Complemental strand, 11967331 - 11967249
Alignment:
Q  388 ttagggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    |||| ||||||||| || |||||| ||||||||  ||||||||||||||||||||||| ||| ||||||||||||| |||||||    
T  11967331 ttagagaccaaaacattgattttatgagttatgaaaccaaaatgaaaacaacaaatta-attaggggaccaaaagtacaattaa 11967249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 396 - 476
Target Start/End: Complemental strand, 35037208 - 35037129
Alignment:
Q  396 caaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagccta 476  Q
    ||||||||| |||||| |||||||| |||||||||||||||   |||||| ||| | |||||||||  |||||||||||||    
T  35037208 caaaacgttgattttatgagttatgagaccaaaatgaaaactgaaaatta-attagaggaccaaaaaaccaattaagccta 35037129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 885
Target Start/End: Complemental strand, 2162849 - 2162786
Alignment:
Q  822 gcttaatctttgtatcatcattcatgaagttcgcgagtgctgaagtgtatgaagatcccttaat 885  Q
    |||||||||||  | ||||||||||||| || || |||  ||||||||||||||||||||||||    
T  2162849 gcttaatctttccagcatcattcatgaaattagcaagttttgaagtgtatgaagatcccttaat 2162786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 884
Target Start/End: Complemental strand, 2169047 - 2168950
Alignment:
Q  787 acttcaggggaagtcgtaagctcctatagcatactgcttaatctttgtatcatcattcatgaagttcgcgagtgctgaagtgtatgaagatcccttaa 884  Q
    |||||| || ||||| ||| |||| | | ||||| ||||||| |||  | ||||||||||||| || || |||  |||||||||||||||||||||||    
T  2169047 acttcaaggaaagtcataacctcccaaaccatacagcttaatgtttccagcatcattcatgaaattagcaagttttgaagtgtatgaagatcccttaa 2168950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 787 - 884
Target Start/End: Complemental strand, 2180680 - 2180583
Alignment:
Q  787 acttcaggggaagtcgtaagctcctatagcatactgcttaatctttgtatcatcattcatgaagttcgcgagtgctgaagtgtatgaagatcccttaa 884  Q
    |||||| || ||||| ||| |||| | | ||||| ||||||| |||  | ||||||||||||| || || |||  |||||||||||||||||||||||    
T  2180680 acttcaaggaaagtcataacctcccaaaccatacagcttaatgtttccagcatcattcatgaaattagcaagttttgaagtgtatgaagatcccttaa 2180583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 390 - 475
Target Start/End: Original strand, 8225 - 8309
Alignment:
Q  390 agggaccaaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaagcct 475  Q
    ||||||||||| ||| |||||||||||||||||||||||||| ||||||  |||||| || ||||||||||||| |||||||||||    
T  8225 agggaccaaaatgttgattttacgagttatgggaccaaaatgtaaacaaagaattac-ttaggggaccaaaagttcaattaagcct 8309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 45; Significance: 4e-16; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 399 - 471
Target Start/End: Complemental strand, 39896 - 39825
Alignment:
Q  399 aacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    |||||| ||||||| |||||||||||||||||||||| || ||||||| || |||||||||||||||||||||    
T  39896 aacgttgattttacaagttatgggaccaaaatgaaaataataaattac-ttaggggaccaaaagtccaattaa 39825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 822 - 885
Target Start/End: Original strand, 14255 - 14318
Alignment:
Q  822 gcttaatctttgtatcatcattcatgaagttcgcgagtgctgaagtgtatgaagatcccttaat 885  Q
    |||||||||||  | ||||||||||||| || || |||  ||||||||||||||||||||||||    
T  14255 gcttaatctttccagcatcattcatgaaattagcaagttttgaagtgtatgaagatcccttaat 14318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 413 - 443
Target Start/End: Original strand, 15908 - 15938
Alignment:
Q  413 gagttatgggaccaaaatgaaaacaacaaat 443  Q
    |||||||||||||||||||||||||||||||    
T  15908 gagttatgggaccaaaatgaaaacaacaaat 15938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 397 - 471
Target Start/End: Complemental strand, 9933 - 9860
Alignment:
Q  397 aaaacgttaattttacgagttatgggaccaaaatgaaaacaacaaattacattgggggaccaaaagtccaattaa 471  Q
    |||||| | |||||||||| |||| ||||||||||||||||  |||||| | | ||||| |||||||||||||||    
T  9933 aaaacgatgattttacgagctatgagaccaaaatgaaaacacgaaatta-aataggggatcaaaagtccaattaa 9860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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