View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263R-Insertion-2 (Length: 112)

Name: NF1263R-Insertion-2
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263R-Insertion-2
NF1263R-Insertion-2
[»] chr5 (2 HSPs)
chr5 (59-103)||(25483251-25483295)
chr5 (59-103)||(25379971-25380015)
[»] chr1 (2 HSPs)
chr1 (59-103)||(50027008-50027052)
chr1 (59-103)||(11471864-11471909)
[»] chr7 (1 HSPs)
chr7 (59-103)||(22491923-22491967)
[»] chr4 (2 HSPs)
chr4 (59-103)||(48793333-48793377)
chr4 (47-99)||(26282858-26282910)
[»] chr6 (1 HSPs)
chr6 (59-103)||(19309833-19309878)
[»] chr2 (3 HSPs)
chr2 (59-103)||(38254957-38255002)
chr2 (59-103)||(43154541-43154586)
chr2 (50-102)||(15021890-15021942)


Alignment Details
Target: chr5 (Bit Score: 45; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 25483251 - 25483295
Alignment:
Q  59 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25483251 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 25483295  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 25379971 - 25380015
Alignment:
Q  59 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  25379971 tgttgttgttttgaaaaaggcaaaggggattgattgatccttgaa 25380015  T

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Target: chr1 (Bit Score: 45; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-17
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 50027052 - 50027008
Alignment:
Q  59 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  50027052 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 50027008  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 11471864 - 11471909
Alignment:
Q  59 tgttgttgttttgaaata-ggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  11471864 tgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 11471909  T

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Target: chr7 (Bit Score: 41; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.000000000000004
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 22491967 - 22491923
Alignment:
Q  59 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  22491967 tgttgttgttttgaaataggcaaaggggattgattgattcttgaa 22491923  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 48793333 - 48793377
Alignment:
Q  59 tgttgttgttttgaaataggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||||||||||| |||||||||||| |||||||    
T  48793333 tgttgttgttttgaaataggcaaacgggattgattgacccttgaa 48793377  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 99
Target Start/End: Complemental strand, 26282910 - 26282858
Alignment:
Q  47 aagcttgrctcatgttgttgttttgaaataggcaaaggggattgattgatcct 99  Q
    ||||||| |||||||||||||| | ||||||||||||  ||||||||||||||    
T  26282910 aagcttgactcatgttgttgttctaaaataggcaaagatgattgattgatcct 26282858  T

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Target: chr6 (Bit Score: 34; Significance: 0.00000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 19309878 - 19309833
Alignment:
Q  59 tgttgttgttttgaaata-ggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  19309878 tgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 19309833  T

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Target: chr2 (Bit Score: 34; Significance: 0.00000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Complemental strand, 38255002 - 38254957
Alignment:
Q  59 tgttgttgttttgaaata-ggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  38255002 tgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 38254957  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.00000000007
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 43154541 - 43154586
Alignment:
Q  59 tgttgttgttttgaaata-ggcaaaggggattgattgatccttgaa 103  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  43154541 tgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 43154586  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 102
Target Start/End: Complemental strand, 15021942 - 15021890
Alignment:
Q  50 cttgrctcatgttgttgttttgaaataggcaaaggggattgattgatccttga 102  Q
    |||| || |||||||| || |||||||| |||||||||||| |||||||||||    
T  15021942 cttgacttatgttgtttttgtgaaatagacaaaggggattggttgatccttga 15021890  T

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