View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263R-Insertion-5 (Length: 349)
Name: NF1263R-Insertion-5
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263R-Insertion-5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 8 - 349
Target Start/End: Complemental strand, 31287523 - 31287182
Alignment:
| Q |
8 |
agaaatacatgcacatggatgaatgtagagatgggttatcctatgaccttgctttttgctatgttttcttgatgaatgattgcctctacattgttcaaac |
107 |
Q |
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| T |
31287523 |
agaaatacatgcacatggatgaatgtagagatgggttgcactatgaccctactttgtgccatcttttcttgatgaataattgtctctacattgttcaaac |
31287424 |
T |
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| Q |
108 |
gaccaaaaatagtgaaccggaaacaattttgggatgtgttctgatccaaaaacacacaacaaaagtacggcaacatcatgagagctatcaaagaagctca |
207 |
Q |
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| T |
31287423 |
gacgaaaaatagtgaactggaaaccattttaggaggtgttatgatccaaaagcacacgacaaaagtacggcaacatcatgagagctatcgaagaagctca |
31287324 |
T |
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| Q |
208 |
tggaataaggcgctggactttttgaaactggacaacaatgtaccaatgcagcctaatgaggtagcaaagtcgatgaaaaataacttgaaatcgttcaaca |
307 |
Q |
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| T |
31287323 |
tggaataaggtgttggactttttgaaactggacaacaatgtaccaatgcagcctaatgaggttgcaaagtcgatgaaaaataacttgaaatcgttcaaca |
31287224 |
T |
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| Q |
308 |
tggtctttgggaaaatatgcagcgttcaatcggcatggtttg |
349 |
Q |
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| T |
31287223 |
tggtctttggggaaatatgcagcgttcaatcggcatggtttg |
31287182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 67 - 336
Target Start/End: Complemental strand, 31278035 - 31277766
Alignment:
| Q |
67 |
tatgttttcttgatgaatgattgcctctacattgttcaaacgaccaaaaatagtgaaccggaaacaattttgggatgtgttctgatccaaaaacacacaa |
166 |
Q |
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| T |
31278035 |
tatgttttcttgatgaataactgcaggtacatggttcaaaaaaccaaagatagtgaattgggaaccattttaggtgatgttgtgatccaaaaatacgtaa |
31277936 |
T |
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| Q |
167 |
caaaagtacggcaacatcatgagagctatcaaagaagctcatggaataaggcgctggactttttgaaactggacaacaatgtaccaatgcagcctaatga |
266 |
Q |
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| T |
31277935 |
caaaagttcggcagcatcataagaactatgaaaaaaactcatggagtaaagtgttggattgtttgaagttggacaacaatgattcaatgcaccctaatga |
31277836 |
T |
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| Q |
267 |
ggtagcaaagtcgatgaaaaataacttgaaatcgttcaacatggtctttgggaaaatatgcagcgttcaa |
336 |
Q |
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| T |
31277835 |
ggtagcaaattcaatgaaaaagaagttaaaatcattcaacatactctttggggaaatatgcagggttcaa |
31277766 |
T |
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