View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1263R-Insertion-6 (Length: 350)
Name: NF1263R-Insertion-6
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263R-Insertion-6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 306; Significance: 1e-172; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 331
Target Start/End: Original strand, 27045436 - 27045759
Alignment:
| Q |
8 |
aaattcactgattcataccctccaaaatctgtactattttcatcaacraaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtcca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045436 |
aaattcactgattcataccctccaaaatctatattattttcatcaacaaaacctaaatgcttccactcagtcagaatcgttaccgcaccgctaccgtcca |
27045535 |
T |
|
| Q |
108 |
tgctaaaatcttgcttatgctccgtcttcggagtgtgatcgatcgagtttttgacataatcagtggaggaagcgatctttttagcctctttgatcaactt |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27045536 |
tgctaaaatcttgcttatgctccgtctccggagtgtgatcgatcgagtttttgacataatcagtggaggaagcaatctttttagcctctttgatcaactt |
27045635 |
T |
|
| Q |
208 |
aacaatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatca |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27045636 |
aacaatttcatagagtggcatttcattgagctcactaacttttaacacaacttttccatccacagtagtattaccataataccctataggcaaaggatca |
27045735 |
T |
|
| Q |
308 |
taacctttcatgctgcgtctaata |
331 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27045736 |
taacctttcatgctgcgtctaata |
27045759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 152 - 331
Target Start/End: Original strand, 27056480 - 27056659
Alignment:
| Q |
152 |
gagtttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
251 |
Q |
| |
|
|||||| |||||||||||| | |||| || ||||||| |||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27056480 |
gagtttgtgacataatcagcaatgaaagcaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcgttgagctcactcactttta |
27056579 |
T |
|
| Q |
252 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataacctttcatgctgcgtctaata |
331 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| ||||| |||||| |||| |||| ||||||| | | || | ||||||||||| |
|
|
| T |
27056580 |
aaacaacatttacatctatagtagaatttccatattaccctttaggtaaagtatcataatcctccaagttgcgtctaata |
27056659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 27069598 - 27069729
Alignment:
| Q |
161 |
acataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaacacaactt |
260 |
Q |
| |
|
||||||||||||| | ||| || ||||||| |||||| |||| ||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| |
|
|
| T |
27069598 |
acataatcagtggtgaaagaaatatttttagtctctttaatcagcttaacaatttcatagagtggcatttcatcgagctcactcacttttaaaacaactt |
27069697 |
T |
|
| Q |
261 |
ttccatccacagtagtattaccataataccct |
292 |
Q |
| |
|
|| |||||| |||| ||| || ||||||||| |
|
|
| T |
27069698 |
ttgcatccatggtagaattcccgtaataccct |
27069729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 27098314 - 27098415
Alignment:
| Q |
155 |
tttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
254 |
Q |
| |
|
||||||||| ||||||||| |||||| || ||||||| |||| |||| | ||||| |||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
27098314 |
tttttgacaaaatcagtggtggaagcaatgtttttagtctctctgatgagcttaataatttcatagagtggcctttcatcgagctcactaacttttaaca |
27098413 |
T |
|
| Q |
255 |
ca |
256 |
Q |
| |
|
|| |
|
|
| T |
27098414 |
ca |
27098415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 152 - 302
Target Start/End: Original strand, 27062522 - 27062672
Alignment:
| Q |
152 |
gagtttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
251 |
Q |
| |
|
|||||| | |||||||||| | | |||| || ||||||| |||||| |||| |||||| |||| ||||||||||||||||| ||| ||||| ||||||| |
|
|
| T |
27062522 |
gagtttcttacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaacgattttatagagtggcatttcatcgagttcactcactttta |
27062621 |
T |
|
| Q |
252 |
acacaacttttccatccacagtagtattaccataataccctataggcaaag |
302 |
Q |
| |
|
| ||||||||| |||| | |||| ||| |||||||||||| |||| |||| |
|
|
| T |
27062622 |
aaacaacttttgcatctatggtagaattgccataataccctttaggtaaag |
27062672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 152 - 292
Target Start/End: Original strand, 27041208 - 27041348
Alignment:
| Q |
152 |
gagtttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
251 |
Q |
| |
|
|||||| | |||||||||| | | |||| || ||||||| |||||| |||| ||||| ||||||||||||||||||| ||||||||||| ||||||| |
|
|
| T |
27041208 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagctcactcactttta |
27041307 |
T |
|
| Q |
252 |
acacaacttttccatccacagtagtattaccataataccct |
292 |
Q |
| |
|
| ||||| ||| |||| | ||||| ||| |||||||||||| |
|
|
| T |
27041308 |
aaacaacatttacatctatagtagaatttccataataccct |
27041348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 152 - 310
Target Start/End: Original strand, 27085645 - 27085803
Alignment:
| Q |
152 |
gagtttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaactttta |
251 |
Q |
| |
|
|||||| | |||||||||| | | |||| || ||||||| |||||| |||| ||||| ||||||||||||||||||| |||||| |||| ||||||| |
|
|
| T |
27085645 |
gagtttgtaacataatcagcagtgaaagcaatatttttagtctctttaatcagcttaatggtttcatagagtggcatttcgttgagcacactcactttta |
27085744 |
T |
|
| Q |
252 |
acacaacttttccatccacagtagtattaccataataccctataggcaaaggatcataa |
310 |
Q |
| |
|
| ||||| ||| |||| | | ||| ||| |||||||||||| |||| |||| ||||||| |
|
|
| T |
27085745 |
aaacaacatttacatctataatagaattcccataataccctttaggtaaagtatcataa |
27085803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 155 - 256
Target Start/End: Original strand, 27105313 - 27105414
Alignment:
| Q |
155 |
tttttgacataatcagtggaggaagcgatctttttagcctctttgatcaacttaacaatttcatagagtggcatttcattgagctcactaacttttaaca |
254 |
Q |
| |
|
||||||| | ||||||||| |||||| || ||||||| |||| | || | |||| |||||||||||||||| |||||| |||||| ||||||||||||| |
|
|
| T |
27105313 |
tttttgataaaatcagtggtggaagcaatgtttttagtctctcttattaggttaataatttcatagagtggcctttcatcgagctcgctaacttttaaca |
27105412 |
T |
|
| Q |
255 |
ca |
256 |
Q |
| |
|
|| |
|
|
| T |
27105413 |
ca |
27105414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 97
Target Start/End: Original strand, 27105172 - 27105258
Alignment:
| Q |
8 |
aaattcactgattcataccctccaaaatctgtactattttcatcaacraaacctaaatgcttccactcagtcagaatcgttaccgcaccg |
97 |
Q |
| |
|
|||||||||| ||||| ||| ||||||||| || |||| |||||| ||||||||||| |||||||| ||||||| |||||| |||||| |
|
|
| T |
27105172 |
aaattcactgcttcatgcccaccaaaatct--ac-atttccatcaagaaaacctaaatgtttccactctgtcagaaccgttactgcaccg |
27105258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University