View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263R-Insertion-7 (Length: 367)

Name: NF1263R-Insertion-7
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263R-Insertion-7
NF1263R-Insertion-7
[»] scaffold0147 (1 HSPs)
scaffold0147 (9-359)||(13305-13655)


Alignment Details
Target: scaffold0147 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 13305 - 13655
Alignment:
Q  9 ccttattcgtgttttgtgaattcagatcctcctttttcctcagttgtgatcgtacgctaccttcataagcgcttttttgtggactttgtttcgaaaaaca 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13305 ccttattcgtgttttgtgaattcagatcctcctttttcctcagttgtgattgtacgctaccttcataagcgcttttttgtggacttcgtttcgaaaaaca 13404  T
Q  109 cacgaagtttccacttcttgcagcatcttccattgcaggctcttttcctttaccaaacatcttcattgtgctgagatcagattgcaagatatcatagaac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13405 cacgaagtttccacttcttgcagcatcttccattgcaggctcttttcctttaccaaacatcttcattgtgctgagatcagattgcaagatatcatagaac 13504  T
Q  209 tcattgtagaattggtcacttgagtaagcttttgcattgtccatattacaaaggaaattgaaggaaagagatcttggaagtttttggtaccctccagaga 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13505 tcattgtagaattggtcacttgagtaagcttttgcattgtccatattacaaaggaaattgaaggaaagagatcttggaagtttttggtaccctccagaga 13604  T
Q  309 aaaaagacctgaaattttttagccttttgttaaagaaacttttggtcttgt 359  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13605 aaaaagacctgaagttttttagccttttgttaaagaaacttttggtcttgt 13655  T

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