View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263R-Insertion-9 (Length: 589)

Name: NF1263R-Insertion-9
Description: NF1263R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263R-Insertion-9
NF1263R-Insertion-9
[»] chr4 (10 HSPs)
chr4 (424-589)||(24056783-24056948)
chr4 (100-166)||(21867441-21867507)
chr4 (100-166)||(21923302-21923368)
chr4 (414-458)||(22905032-22905076)
chr4 (414-458)||(22956700-22956744)
chr4 (414-458)||(43441788-43441832)
chr4 (415-458)||(44645346-44645389)
chr4 (516-576)||(26728379-26728439)
chr4 (386-462)||(26728493-26728569)
chr4 (400-472)||(34821674-34821746)
[»] chr1 (1 HSPs)
chr1 (116-168)||(3213944-3213996)
[»] chr8 (2 HSPs)
chr8 (406-464)||(4903479-4903537)
chr8 (407-460)||(3961182-3961235)
[»] scaffold0272 (1 HSPs)
scaffold0272 (101-166)||(2472-2537)
[»] chr7 (1 HSPs)
chr7 (406-446)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 2e-81; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 424 - 589
Target Start/End: Original strand, 24056783 - 24056948
Alignment:
Q  424 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac 24056882  T
Q  524 ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctca 589  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24056883 ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctca 24056948  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 21867441 - 21867507
Alignment:
Q  100 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 166  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21867441 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21867507  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 166
Target Start/End: Original strand, 21923302 - 21923368
Alignment:
Q  100 gtcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 166  Q
    ||||||||| || | ||||||||||||||| ||||||||||| |||| || |||||| |||||||||    
T  21923302 gtcatttctaactcgccaaattgtccaaatagccgcatgccagataatccagtaccccttacgaatc 21923368  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  414 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 458  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  414 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 458  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 458
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  414 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 458  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 415 - 458
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  415 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 458  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 516 - 576
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
Q  516 cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca 576  Q
    |||||||||||||||||||||| |||||||  || | ||| ||| ||||||||| ||||||    
T  26728439 cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca 26728379  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 462
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  386 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 462  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 472
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  400 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 472  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3213996 - 3213944
Alignment:
Q  116 caaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatcct 168  Q
    |||||||||||||||| |||||| |||||||||||||| |||||  |||||||    
T  3213996 caaattgtccaaatcgacgcatgtcaaataagccggtaacctttttgaatcct 3213944  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 406 - 464
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  406 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 464  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 407 - 460
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  407 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 460  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: scaffold0272 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 166
Target Start/End: Complemental strand, 2537 - 2472
Alignment:
Q  101 tcatttctcaccctccaaattgtccaaatcgccgcatgccaaataagccggtaccctttacgaatc 166  Q
    ||||||||||||||||||||  |||||| ||| || |||||||| | || ||| ||||||||||||    
T  2537 tcatttctcaccctccaaatactccaaaccgcggcgtgccaaatcaaccagtaacctttacgaatc 2472  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  406 aagaagtttccaagaaaaagccaccactttggacggagctg 446  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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