View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263_high_11 (Length: 251)

Name: NF1263_high_11
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263_high_11
NF1263_high_11
[»] scaffold0023 (1 HSPs)
scaffold0023 (172-217)||(125565-125610)
[»] chr5 (16 HSPs)
chr5 (173-221)||(26404867-26404915)
chr5 (172-207)||(10542041-10542076)
chr5 (172-207)||(10691043-10691078)
chr5 (172-207)||(13952458-13952493)
chr5 (172-215)||(16867752-16867795)
chr5 (172-207)||(21000354-21000389)
chr5 (172-207)||(22634117-22634152)
chr5 (172-207)||(22634367-22634402)
chr5 (172-207)||(38941446-38941481)
chr5 (172-206)||(23294756-23294790)
chr5 (172-210)||(26006510-26006548)
chr5 (172-210)||(26524643-26524681)
chr5 (172-209)||(29989715-29989752)
chr5 (173-209)||(6802074-6802110)
chr5 (175-207)||(14946657-14946689)
chr5 (172-204)||(40616447-40616479)
[»] chr3 (12 HSPs)
chr3 (172-216)||(5154712-5154756)
chr3 (172-211)||(39937012-39937051)
chr3 (174-214)||(43674174-43674214)
chr3 (172-207)||(51659055-51659090)
chr3 (172-210)||(7014978-7015016)
chr3 (172-210)||(32858407-32858445)
chr3 (172-209)||(7731268-7731305)
chr3 (172-216)||(5047158-5047202)
chr3 (172-204)||(16871424-16871456)
chr3 (174-210)||(23043125-23043161)
chr3 (174-210)||(25024920-25024956)
chr3 (172-208)||(37585635-37585671)
[»] scaffold0043 (2 HSPs)
scaffold0043 (172-215)||(47062-47105)
scaffold0043 (172-209)||(47324-47361)
[»] chr1 (12 HSPs)
chr1 (172-207)||(16985440-16985475)
chr1 (172-207)||(6954130-6954165)
chr1 (174-209)||(26712008-26712043)
chr1 (172-215)||(29525615-29525658)
chr1 (172-207)||(43703010-43703045)
chr1 (172-210)||(15734471-15734509)
chr1 (176-210)||(48759699-48759733)
chr1 (172-210)||(51237959-51237997)
chr1 (174-207)||(9403322-9403355)
chr1 (175-212)||(15734814-15734851)
chr1 (173-210)||(49613784-49613821)
chr1 (176-212)||(5613714-5613750)
[»] chr4 (13 HSPs)
chr4 (172-210)||(17697151-17697189)
chr4 (172-209)||(3238413-3238450)
chr4 (172-209)||(19495409-19495446)
chr4 (172-207)||(4758451-4758486)
chr4 (176-207)||(6788143-6788174)
chr4 (172-207)||(10264398-10264433)
chr4 (172-207)||(15323680-15323715)
chr4 (172-207)||(20569899-20569934)
chr4 (172-207)||(40269804-40269839)
chr4 (172-206)||(23573388-23573422)
chr4 (173-207)||(49236326-49236360)
chr4 (172-209)||(19291596-19291633)
chr4 (186-219)||(54553072-54553105)
[»] chr2 (20 HSPs)
chr2 (172-210)||(20513666-20513704)
chr2 (172-214)||(40452173-40452215)
chr2 (172-213)||(7511341-7511382)
chr2 (172-209)||(28192295-28192332)
chr2 (172-207)||(39257154-39257189)
chr2 (172-210)||(24388854-24388892)
chr2 (172-210)||(25890544-25890582)
chr2 (172-210)||(33010795-33010833)
chr2 (176-210)||(34828901-34828935)
chr2 (173-210)||(6748971-6749008)
chr2 (175-212)||(12883335-12883372)
chr2 (174-207)||(20025572-20025605)
chr2 (172-209)||(22265133-22265170)
chr2 (174-207)||(39164981-39165014)
chr2 (172-205)||(40926929-40926962)
chr2 (172-208)||(5513482-5513518)
chr2 (172-216)||(20101009-20101053)
chr2 (174-210)||(33216640-33216676)
chr2 (172-208)||(34963603-34963639)
chr2 (176-220)||(39163810-39163854)
[»] chr6 (14 HSPs)
chr6 (174-207)||(20222561-20222594)
chr6 (174-207)||(22116545-22116578)
chr6 (172-207)||(2255363-2255398)
chr6 (172-207)||(18698999-18699034)
chr6 (172-207)||(25948630-25948665)
chr6 (172-207)||(32276336-32276371)
chr6 (172-210)||(9964350-9964388)
chr6 (172-210)||(15502524-15502562)
chr6 (172-210)||(28632017-28632055)
chr6 (173-207)||(30240816-30240850)
chr6 (175-212)||(9865282-9865319)
chr6 (176-212)||(4212704-4212740)
chr6 (172-208)||(4407867-4407903)
chr6 (174-210)||(27660627-27660663)
[»] scaffold0035 (1 HSPs)
scaffold0035 (172-207)||(72429-72464)
[»] chr8 (7 HSPs)
chr8 (172-207)||(15113875-15113910)
chr8 (172-206)||(6162947-6162981)
chr8 (172-210)||(22981059-22981097)
chr8 (176-213)||(33330853-33330890)
chr8 (172-209)||(40628424-40628461)
chr8 (176-209)||(43897703-43897736)
chr8 (176-208)||(43898813-43898845)
[»] chr7 (11 HSPs)
chr7 (172-211)||(4098093-4098132)
chr7 (172-207)||(7881416-7881451)
chr7 (176-207)||(13593469-13593500)
chr7 (172-207)||(17358004-17358039)
chr7 (172-210)||(23775142-23775180)
chr7 (174-207)||(15093539-15093572)
chr7 (172-217)||(17358254-17358299)
chr7 (174-211)||(38652037-38652074)
chr7 (172-217)||(47532774-47532819)
chr7 (172-208)||(31298798-31298834)
chr7 (173-209)||(41745340-41745376)
[»] scaffold0014 (1 HSPs)
scaffold0014 (176-210)||(165348-165382)
[»] scaffold0036 (1 HSPs)
scaffold0036 (174-207)||(90719-90752)


Alignment Details
Target: scaffold0023 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 125565 - 125610
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaatat 217  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||    
T  125565 gacatatattacaggggtgaaaaacactattaacccaaataaatat 125610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 26404915 - 26404867
Alignment:
Q  173 acatatattataagggtgaaaaacactattaacccaaataaatataaga 221  Q
    |||||||||| |||||||||||||||||||||| |||| ||||||||||    
T  26404915 acatatattacaagggtgaaaaacactattaactcaaaaaaatataaga 26404867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 10542076 - 10542041
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10542076 gacatatattacaagggtgaaaaacactattaaccc 10542041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 10691043 - 10691078
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10691043 gacatatattacaagggtgaaaaacactattaaccc 10691078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 13952493 - 13952458
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  13952493 gacatatattacaagggtgaaaaacactattaaccc 13952458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 16867795 - 16867752
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaat 215  Q
    ||||||||||| | ||||||||||||||||||||||||| ||||    
T  16867795 gacatatattacaggggtgaaaaacactattaacccaaaaaaat 16867752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 21000389 - 21000354
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  21000389 gacatatattacaagggtgaaaaacactattaaccc 21000354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 22634152 - 22634117
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22634152 gacatatattacaagggtgaaaaacactattaaccc 22634117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 22634367 - 22634402
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  22634367 gacatatattacaagggtgaaaaacactattaaccc 22634402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 38941481 - 38941446
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38941481 gacatatattataggggtgaaaaacactattaaccc 38941446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 23294756 - 23294790
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacc 206  Q
    ||||||||||| |||||||||||||||||||||||    
T  23294756 gacatatattacaagggtgaaaaacactattaacc 23294790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 26006548 - 26006510
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  26006548 gacatatattacaggggtgaaaaacactattaacccaaa 26006510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 26524643 - 26524681
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  26524643 gacatatattacaggggtgaaaaacactattaacccaaa 26524681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 29989715 - 29989752
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  29989715 gacatatattacaggggtgaaaaacactattaacccaa 29989752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 6802110 - 6802074
Alignment:
Q  173 acatatattataagggtgaaaaacactattaacccaa 209  Q
    |||||||||| | ||||||||||||||||||||||||    
T  6802110 acatatattacaggggtgaaaaacactattaacccaa 6802074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 207
Target Start/End: Original strand, 14946657 - 14946689
Alignment:
Q  175 atatattataagggtgaaaaacactattaaccc 207  Q
    |||||||| ||||||||||||||||||||||||    
T  14946657 atatattacaagggtgaaaaacactattaaccc 14946689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 40616447 - 40616479
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaa 204  Q
    ||||||||||||| |||||||||||||||||||    
T  40616447 gacatatattataggggtgaaaaacactattaa 40616479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 5154756 - 5154712
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaata 216  Q
    ||||||||||| | |||||||||||||||||||||||||||||||    
T  5154756 gacatatattacaggggtgaaaaacactattaacccaaataaata 5154712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 39937051 - 39937012
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaat 211  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  39937051 gacatatattacaagggtgaaaaacactattaacccaaat 39937012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 43674214 - 43674174
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaataaa 214  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  43674214 catatattacaggggtgaaaaacactattaacccaaataaa 43674174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 51659090 - 51659055
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  51659090 gacatatattacaagggtgaaaaacactattaaccc 51659055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 7014978 - 7015016
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  7014978 gacatatattacaggggtgaaaaacactattaacccaaa 7015016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 32858407 - 32858445
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| ||||||||||| |||||||||||||||    
T  32858407 gacatatattacaagggtgaaaagcactattaacccaaa 32858445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 7731305 - 7731268
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  7731305 gacatatattacaggggtgaaaaacactattaacccaa 7731268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Complemental strand, 5047202 - 5047158
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaata 216  Q
    ||||||||||| ||||||||||| |||||||||||| || |||||    
T  5047202 gacatatattacaagggtgaaaatcactattaaccctaaaaaata 5047158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 16871424 - 16871456
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaa 204  Q
    ||||||||||| |||||||||||||||||||||    
T  16871424 gacatatattacaagggtgaaaaacactattaa 16871456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 23043125 - 23043161
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||| | |||||||||||||||||||||||||    
T  23043125 catatattacaggggtgaaaaacactattaacccaaa 23043161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 25024956 - 25024920
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||| | |||||||||||||||||||||||||    
T  25024956 catatattacaggggtgaaaaacactattaacccaaa 25024920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 37585671 - 37585635
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccca 208  Q
    ||||||||||| | |||||||||||||||||||||||    
T  37585671 gacatatattacaggggtgaaaaacactattaaccca 37585635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 47105 - 47062
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaat 215  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||    
T  47105 gacatatattacaagggtgaaaaacactattaacccaaaaaaat 47062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 47324 - 47361
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  47324 gacatatattacaagggtgaaaaacactattaacccaa 47361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 16985440 - 16985475
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||||||||||||||||||    
T  16985440 gacatatattataagggtgaaaaacactattaaccc 16985475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 6954130 - 6954165
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6954130 gacatatattataggggtgaaaaacactattaaccc 6954165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 174 - 209
Target Start/End: Complemental strand, 26712043 - 26712008
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26712043 catatattacaagggtgaaaaacactattaacccaa 26712008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 215
Target Start/End: Complemental strand, 29525658 - 29525615
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaat 215  Q
    ||||||||||| | |||||||||||| |||||||||||||||||    
T  29525658 gacatatattacaggggtgaaaaacaatattaacccaaataaat 29525615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 43703045 - 43703010
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||| ||||||||||||||||||||||    
T  43703045 gacatatattataggggtgaaaaacactattaaccc 43703010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 15734509 - 15734471
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  15734509 gacatatattacaggggtgaaaaacactattaacccaaa 15734471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Original strand, 48759699 - 48759733
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||| |||||||||||||||||||||||||||    
T  48759699 tatattacaagggtgaaaaacactattaacccaaa 48759733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 51237997 - 51237959
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  51237997 gacatatattacaggggtgaaaaacactattaacccaaa 51237959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 9403355 - 9403322
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  9403355 catatattacaagggtgaaaaacactattaaccc 9403322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 15734814 - 15734851
Alignment:
Q  175 atatattataagggtgaaaaacactattaacccaaata 212  Q
    |||||||| | |||||||||||||||||||||||||||    
T  15734814 atatattaaaggggtgaaaaacactattaacccaaata 15734851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 49613784 - 49613821
Alignment:
Q  173 acatatattataagggtgaaaaacactattaacccaaa 210  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  49613784 acatgtattataggggtgaaaaacactattaacccaaa 49613821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 5613750 - 5613714
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaata 212  Q
    ||||||| | |||||||||||||||||||||||||||    
T  5613750 tatattacaggggtgaaaaacactattaacccaaata 5613714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 17697189 - 17697151
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  17697189 gacatatattacaagggtgaaaaacactattaacccaaa 17697151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 3238450 - 3238413
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  3238450 gacatatattacaagggtgaaaaacactattaacccaa 3238413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 19495446 - 19495409
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  19495446 gacatatattacaagggtgaaaaacactattaacccaa 19495409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 4758486 - 4758451
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||| ||||||||||||||||||||||    
T  4758486 gacatatattataggggtgaaaaacactattaaccc 4758451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 6788143 - 6788174
Alignment:
Q  176 tatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||||||||||||||    
T  6788143 tatattataagggtgaaaaacactattaaccc 6788174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 10264433 - 10264398
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  10264433 gacatatattacaagggtgaaaaacactattaaccc 10264398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 15323680 - 15323715
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15323680 gacatatattacaagggtgaaaaacactattaaccc 15323715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 20569934 - 20569899
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  20569934 gacatatattacaagggtgaaaaacactattaaccc 20569899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 40269804 - 40269839
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  40269804 gacatatattacaagggtgaaaaacactattaaccc 40269839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Original strand, 23573388 - 23573422
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacc 206  Q
    ||||||||||| |||||||||||||||||||||||    
T  23573388 gacatatattacaagggtgaaaaacactattaacc 23573422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Complemental strand, 49236360 - 49236326
Alignment:
Q  173 acatatattataagggtgaaaaacactattaaccc 207  Q
    |||||||||||| ||||||||||||||||||||||    
T  49236360 acatatattataggggtgaaaaacactattaaccc 49236326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 19291596 - 19291633
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||||| ||||||||| ||||||||||||||    
T  19291596 gacatatattataggggtgaaaagcactattaacccaa 19291633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 54553105 - 54553072
Alignment:
Q  186 gggtgaaaaacactattaacccaaataaatataa 219  Q
    ||||||||||||||||||||||||| ||||||||    
T  54553105 gggtgaaaaacactattaacccaaaaaaatataa 54553072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 20513704 - 20513666
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  20513704 gacatatattataggggtgaaaaacactattaacccaaa 20513666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 214
Target Start/End: Original strand, 40452173 - 40452215
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaa 214  Q
    ||||||||||||| |||||||||||||||||||||| ||||||    
T  40452173 gacatatattataggggtgaaaaacactattaaccctaataaa 40452215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 213
Target Start/End: Complemental strand, 7511382 - 7511341
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataa 213  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  7511382 gacatatattataggggtgaaaaacactattaaccctaataa 7511341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 28192332 - 28192295
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  28192332 gacatatattataagggtgaaaaacactactaacccaa 28192295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 39257189 - 39257154
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  39257189 gacatatattacaagggtgaaaaacactattaaccc 39257154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 24388854 - 24388892
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  24388854 gacatatattacaggggtgaaaaacactattaacccaaa 24388892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 25890582 - 25890544
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  25890582 gacatatattataggggtaaaaaacactattaacccaaa 25890544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 33010833 - 33010795
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  33010833 gacatatattacaggggtgaaaaacactattaacccaaa 33010795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 34828935 - 34828901
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||| |||||||||||||||||||||||||||    
T  34828935 tatattacaagggtgaaaaacactattaacccaaa 34828901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 6748971 - 6749008
Alignment:
Q  173 acatatattataagggtgaaaaacactattaacccaaa 210  Q
    |||||||||| | |||||||||||||||||||||||||    
T  6748971 acatatattacaggggtgaaaaacactattaacccaaa 6749008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 12883335 - 12883372
Alignment:
Q  175 atatattataagggtgaaaaacactattaacccaaata 212  Q
    |||||||| | |||||||||||||||||||||||||||    
T  12883335 atatattaaaggggtgaaaaacactattaacccaaata 12883372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 20025572 - 20025605
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  20025572 catatattacaagggtgaaaaacactattaaccc 20025605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Complemental strand, 22265170 - 22265133
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  22265170 gacatatattacaggggtgaaaaacactattaacccaa 22265133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 39164981 - 39165014
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||| ||||||||||||    
T  39164981 catatattataagggtgaaaagcactattaaccc 39165014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 205
Target Start/End: Original strand, 40926929 - 40926962
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaac 205  Q
    ||||||||||| ||||||||||||||||||||||    
T  40926929 gacatatattacaagggtgaaaaacactattaac 40926962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 5513518 - 5513482
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccca 208  Q
    ||||||||||| | |||||||||||||||||||||||    
T  5513518 gacatatattacaggggtgaaaaacactattaaccca 5513482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 20101009 - 20101053
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaata 216  Q
    ||||||||||| | |||||||||||||||||||||| || |||||    
T  20101009 gacatatattacaggggtgaaaaacactattaacccgaaaaaata 20101053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 33216640 - 33216676
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||| | |||||||||||||||||||||||||    
T  33216640 catatattacaggggtgaaaaacactattaacccaaa 33216676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 34963603 - 34963639
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccca 208  Q
    ||||||||||| | |||||||||||||||||||||||    
T  34963603 gacatatattacaggggtgaaaaacactattaaccca 34963639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 39163854 - 39163810
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaataaatataag 220  Q
    ||||||| | |||||||||||||||||||||| ||||||| ||||    
T  39163854 tatattacaggggtgaaaaacactattaaccctaataaatttaag 39163810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 20222561 - 20222594
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||||||||||||||||    
T  20222561 catatattataagggtgaaaaacactattaaccc 20222594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 22116545 - 22116578
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||||||||||||||||    
T  22116545 catatattataagggtgaaaaacactattaaccc 22116578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 2255398 - 2255363
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2255398 gacatatattacaagggtgaaaaacactattaaccc 2255363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 18699034 - 18698999
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18699034 gacatatattacaagggtgaaaaacactattaaccc 18698999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 25948665 - 25948630
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  25948665 gacatatattacaagggtgaaaaacactattaaccc 25948630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 32276336 - 32276371
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  32276336 gacatatattacaagggtgaaaaacactattaaccc 32276371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 9964388 - 9964350
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  9964388 gacatatattacaggggtgaaaaacactattaacccaaa 9964350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Complemental strand, 15502562 - 15502524
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  15502562 gacatatattacaggggtgaaaaacactattaacccaaa 15502524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 28632017 - 28632055
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  28632017 gacatatattacaggggtgaaaaacactattaacccaaa 28632055  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 30240816 - 30240850
Alignment:
Q  173 acatatattataagggtgaaaaacactattaaccc 207  Q
    |||||||||| ||||||||||||||||||||||||    
T  30240816 acatatattacaagggtgaaaaacactattaaccc 30240850  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 212
Target Start/End: Original strand, 9865282 - 9865319
Alignment:
Q  175 atatattataagggtgaaaaacactattaacccaaata 212  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  9865282 atatattataggggtgaaaaacactattaaccctaata 9865319  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 4212704 - 4212740
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaata 212  Q
    ||||||| |||||||||||||||||||||||| ||||    
T  4212704 tatattacaagggtgaaaaacactattaaccctaata 4212740  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 4407903 - 4407867
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccca 208  Q
    ||||||||||| | |||||||||||||||||||||||    
T  4407903 gacatatattacaggggtgaaaaacactattaaccca 4407867  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 27660627 - 27660663
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||| | |||||||||||||||||||||||||    
T  27660627 catatattacaggggtgaaaaacactattaacccaaa 27660663  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Original strand, 72429 - 72464
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  72429 gacatatattacaagggtgaaaaacactattaaccc 72464  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 15113910 - 15113875
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  15113910 gacatatattacaagggtgaaaaacactattaaccc 15113875  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 6162981 - 6162947
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacc 206  Q
    ||||||||||| |||||||||||||||||||||||    
T  6162981 gacatatattacaagggtgaaaaacactattaacc 6162947  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 22981059 - 22981097
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  22981059 gacatatattacaggggtgaaaaacactattaacccaaa 22981097  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 213
Target Start/End: Complemental strand, 33330890 - 33330853
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaataa 213  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  33330890 tatattacaggggtgaaaaacactattaacccaaataa 33330853  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 209
Target Start/End: Original strand, 40628424 - 40628461
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  40628424 gacatatattacaggggtgaaaaacactattaacccaa 40628461  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 209
Target Start/End: Complemental strand, 43897736 - 43897703
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaa 209  Q
    ||||||| ||||||||||||||||||||||||||    
T  43897736 tatattacaagggtgaaaaacactattaacccaa 43897703  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 208
Target Start/End: Original strand, 43898813 - 43898845
Alignment:
Q  176 tatattataagggtgaaaaacactattaaccca 208  Q
    ||||||| |||||||||||||||||||||||||    
T  43898813 tatattacaagggtgaaaaacactattaaccca 43898845  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 211
Target Start/End: Complemental strand, 4098132 - 4098093
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaat 211  Q
    ||||||||||| | ||||||||||||||||||||||||||    
T  4098132 gacatatattacaggggtgaaaaacactattaacccaaat 4098093  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 7881451 - 7881416
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  7881451 gacatatattacaagggtgaaaaacactattaaccc 7881416  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 207
Target Start/End: Original strand, 13593469 - 13593500
Alignment:
Q  176 tatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||||||||||||||||||||||||    
T  13593469 tatattataagggtgaaaaacactattaaccc 13593500  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 207
Target Start/End: Complemental strand, 17358039 - 17358004
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||||    
T  17358039 gacatatattacaagggtgaaaaacactattaaccc 17358004  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 210
Target Start/End: Original strand, 23775142 - 23775180
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||||||| | |||||||||||||||||||||||||    
T  23775142 gacatatattacaggggtgaaaaacactattaacccaaa 23775180  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 15093572 - 15093539
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  15093572 catatattacaagggtgaaaaacactattaaccc 15093539  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Original strand, 17358254 - 17358299
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaatat 217  Q
    ||||||||||| | |||||||||||||||||||||| | |||||||    
T  17358254 gacatatattacaggggtgaaaaacactattaaccctattaaatat 17358299  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 211
Target Start/End: Original strand, 38652037 - 38652074
Alignment:
Q  174 catatattataagggtgaaaaacactattaacccaaat 211  Q
    ||||||||| | ||||||||||||||||||||||||||    
T  38652037 catatattaaaggggtgaaaaacactattaacccaaat 38652074  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 47532819 - 47532774
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaacccaaataaatat 217  Q
    ||||||||||| | ||||||||| ||||||||||||||| ||||||    
T  47532819 gacatatattacaggggtgaaaagcactattaacccaaaaaaatat 47532774  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 31298798 - 31298834
Alignment:
Q  172 gacatatattataagggtgaaaaacactattaaccca 208  Q
    ||||||||||| | |||||||||||||||||||||||    
T  31298798 gacatatattacaggggtgaaaaacactattaaccca 31298834  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 41745340 - 41745376
Alignment:
Q  173 acatatattataagggtgaaaaacactattaacccaa 209  Q
    |||||||||| ||||||||||| ||||||||||||||    
T  41745340 acatatattacaagggtgaaaagcactattaacccaa 41745376  T

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Target: scaffold0014 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 210
Target Start/End: Complemental strand, 165382 - 165348
Alignment:
Q  176 tatattataagggtgaaaaacactattaacccaaa 210  Q
    ||||||| |||||||||||||||||||||||||||    
T  165382 tatattacaagggtgaaaaacactattaacccaaa 165348  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 90752 - 90719
Alignment:
Q  174 catatattataagggtgaaaaacactattaaccc 207  Q
    ||||||||||| ||||||||||||||||||||||    
T  90752 catatattataggggtgaaaaacactattaaccc 90719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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