View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_high_5 (Length: 285)
Name: NF1263_high_5
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 46 - 223
Target Start/End: Complemental strand, 38444528 - 38444351
Alignment:
| Q |
46 |
aatattgtgcatcatattttcaggttggatttaatatatagaaatagctatatgatctacacaaaagactacttggttgatactagacaggtaagatgaa |
145 |
Q |
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| T |
38444528 |
aatattgtgcatcatattttcaggttggatttaatatatagaaatagctatacgatctacacctaagactacttggttgatactagacaggtaagatgaa |
38444429 |
T |
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| Q |
146 |
atcaagctgatcaatgaaattacatttacaatgaatcatcaaattaattaactacaacctcatatcaatgaaaattgt |
223 |
Q |
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| T |
38444428 |
atcaaactgatcaatgaaattacatttacaatgaatcatcaaattaattaactacaacctcatatcaatgaaaattgt |
38444351 |
T |
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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 173
Target Start/End: Original strand, 53349638 - 53349702
Alignment:
| Q |
109 |
aaagactacttggttgatactagacaggtaagatgaaatcaagctgatcaatgaaattacattta |
173 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||| |
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| T |
53349638 |
aaaggctacttggttgatactagacaggtaagatgaaatcaaactcatcaatcaaattactttta |
53349702 |
T |
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