View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263_low_1 (Length: 703)

Name: NF1263_low_1
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263_low_1
NF1263_low_1
[»] chr5 (13 HSPs)
chr5 (30-244)||(36229909-36230124)
chr5 (542-694)||(36230228-36230387)
chr5 (277-317)||(36230163-36230203)
chr5 (660-694)||(31646322-31646356)
chr5 (362-397)||(30371342-30371377)
chr5 (364-402)||(3100496-3100534)
chr5 (364-401)||(1098639-1098676)
chr5 (364-401)||(3100416-3100453)
chr5 (364-401)||(40515238-40515275)
chr5 (362-402)||(31706050-31706090)
chr5 (366-402)||(35032361-35032397)
chr5 (369-401)||(36138374-36138406)
chr5 (362-402)||(41814392-41814432)
[»] chr7 (5 HSPs)
chr7 (641-694)||(40954077-40954130)
chr7 (362-401)||(38940229-38940268)
chr7 (366-402)||(30138879-30138915)
chr7 (356-401)||(28229110-28229155)
chr7 (362-402)||(21886476-21886516)
[»] chr4 (11 HSPs)
chr4 (634-694)||(22487745-22487805)
chr4 (639-683)||(46695760-46695804)
chr4 (365-401)||(48806348-48806384)
chr4 (362-399)||(12912618-12912655)
chr4 (364-401)||(20215578-20215615)
chr4 (362-399)||(27537065-27537102)
chr4 (362-399)||(54931913-54931950)
chr4 (362-402)||(4484083-4484123)
chr4 (362-402)||(12672456-12672496)
chr4 (362-402)||(40952439-40952479)
chr4 (362-402)||(55416309-55416349)
[»] chr3 (7 HSPs)
chr3 (639-694)||(33511353-33511407)
chr3 (638-694)||(27818725-27818781)
chr3 (362-401)||(24596900-24596939)
chr3 (362-402)||(50466822-50466862)
chr3 (362-399)||(35511865-35511902)
chr3 (359-399)||(23444367-23444407)
chr3 (362-402)||(51060672-51060712)
[»] chr6 (8 HSPs)
chr6 (615-690)||(12588030-12588105)
chr6 (172-211)||(10749142-10749181)
chr6 (362-401)||(32124216-32124255)
chr6 (364-397)||(6032977-6033010)
chr6 (362-399)||(29419881-29419918)
chr6 (357-402)||(31158933-31158978)
chr6 (365-401)||(1302759-1302795)
chr6 (362-402)||(10258395-10258435)
[»] chr8 (4 HSPs)
chr8 (364-401)||(4613651-4613688)
chr8 (364-402)||(7258676-7258714)
chr8 (364-402)||(10117061-10117099)
chr8 (362-402)||(9015907-9015947)
[»] chr2 (4 HSPs)
chr2 (364-397)||(23738330-23738363)
chr2 (359-402)||(43732144-43732187)
chr2 (358-404)||(13304476-13304522)
chr2 (364-402)||(42530503-42530541)
[»] chr1 (7 HSPs)
chr1 (634-677)||(42379060-42379103)
chr1 (364-402)||(13043431-13043469)
chr1 (364-402)||(46412779-46412817)
chr1 (365-402)||(5595511-5595548)
chr1 (364-401)||(39940578-39940615)
chr1 (364-400)||(18551354-18551390)
chr1 (362-402)||(42761462-42761502)


Alignment Details
Target: chr5 (Bit Score: 156; Significance: 2e-82; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 30 - 244
Target Start/End: Original strand, 36229909 - 36230124
Alignment:
Q  30 gttgcttgtgtaacttgggtatgaccaacattgcagtttaaggatttggattccatatgattagtcttgatcattgatttgaaatcgaccgattcgcatt 129  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||||    
T  36229909 gttgcttgagtaacttgggtatgaccaacattgcagtttaaggatttggattccatatgattaatcttgatcatcgatttgaaatcgacccattcacatt 36230008  T
Q  130 acttctttatgaa-gacccttttattattattatnnnnnnnngttttgatactcaataatctcgaaattaatttgtatagattctttaagaaccataatg 228  Q
    || |||||||||| ||||||||||||||||||||        |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36230009 acatctttatgaaggacccttttattattattataaaaaaaggttttgatactctataatctcgaaattaatttgtatagattctttaagaaccataatg 36230108  T
Q  229 aaaattagtttttctt 244  Q
    ||||||||||||||||    
T  36230109 aaaattagtttttctt 36230124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 542 - 694
Target Start/End: Original strand, 36230228 - 36230387
Alignment:
Q  542 ataagaaatttgactgtggact------aataagagaatgcaaa-gggaaaacaagcatggaaattgtgaagtcataatgagggatgaatgcatgcatat 634  Q
    ||||||||||||| ||||||||      |||||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  36230228 ataagaaatttgattgtggactcttataaataagagaatgcaaaagggaaaacaagcatggaaattgtgaagtcataatttgggatgaatgcatgcatat 36230327  T
Q  635 tgttgtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 694  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36230328 tgttgtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 36230387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 277 - 317
Target Start/End: Original strand, 36230163 - 36230203
Alignment:
Q  277 tgatattatgtagaaactattcaaaacacttctcattttaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36230163 tgatattatgtagaaactattcaaaacacttctcattttaa 36230203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 660 - 694
Target Start/End: Complemental strand, 31646356 - 31646322
Alignment:
Q  660 aaatattttaaatttttatttttaagtagtataat 694  Q
    |||||||||||||||||||||||||||||||||||    
T  31646356 aaatattttaaatttttatttttaagtagtataat 31646322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 30371342 - 30371377
Alignment:
Q  362 attattataagtaaaaattgacattttagattcatt 397  Q
    ||||||||||||||||||| ||||||||||||||||    
T  30371342 attattataagtaaaaattaacattttagattcatt 30371377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 3100534 - 3100496
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||||||| |||||| |||||||||||||||||||||    
T  3100534 tattataagtgaaaatttacattttagattcattcaatt 3100496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 1098639 - 1098676
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  1098639 tattataagtaaaagttgactttttagattcattcaat 1098676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 3100416 - 3100453
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||| ||||||| ||||||||||||||||||||    
T  3100416 tattataagcaaaaattaacattttagattcattcaat 3100453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 40515238 - 40515275
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  40515238 tattataagtaaaagttgactttttagattcattcaat 40515275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 31706090 - 31706050
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||||| |||||||| ||||||| ||||    
T  31706090 attattataagtaaaaatttacattttaaattcatttaatt 31706050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 35032397 - 35032361
Alignment:
Q  366 ttataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||| ||||||| |||||||||||||||||||||    
T  35032397 ttataagcaaaaatttacattttagattcattcaatt 35032361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 369 - 401
Target Start/End: Original strand, 36138374 - 36138406
Alignment:
Q  369 taagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||||||||||||| |||||||||||    
T  36138374 taagtaaaaattgacattttaaattcattcaat 36138406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 41814392 - 41814432
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||| | ||||||| |||||||||||||||||||||    
T  41814392 attattataggcaaaaatttacattttagattcattcaatt 41814432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 641 - 694
Target Start/End: Original strand, 40954077 - 40954130
Alignment:
Q  641 gtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 694  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  40954077 gtgggattgtgcctacacaaaatattttaaatttttatttttaagtagaataat 40954130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 362 - 401
Target Start/End: Original strand, 38940229 - 38940268
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  38940229 attattataagcaaaaattgacattttagattcattcaat 38940268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 30138915 - 30138879
Alignment:
Q  366 ttataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||| |||||||||||||||||||||    
T  30138915 ttataagtaaaaatttacattttagattcattcaatt 30138879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 356 - 401
Target Start/End: Complemental strand, 28229155 - 28229110
Alignment:
Q  356 gtaattattattataagtaaaaattgacattttagattcattcaat 401  Q
    |||||| ||||||||||  ||||||||||||||| |||||||||||    
T  28229155 gtaattgttattataagccaaaattgacattttaaattcattcaat 28229110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 21886476 - 21886516
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  21886476 attattataagcaaaaatttatattttagattcattcaatt 21886516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 3e-16; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 634 - 694
Target Start/End: Complemental strand, 22487805 - 22487745
Alignment:
Q  634 ttgttgtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 694  Q
    |||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||    
T  22487805 ttgtggtgtgggcttgtgcccacacaaaatattttacatttttattttgaagtagtataat 22487745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 639 - 683
Target Start/End: Original strand, 46695760 - 46695804
Alignment:
Q  639 gtgtgggcttgtgcctacacaaaatattttaaatttttattttta 683  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  46695760 gtgtgggcttgtgcctacacaaaatattttaaatttttattttta 46695804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 365 - 401
Target Start/End: Complemental strand, 48806384 - 48806348
Alignment:
Q  365 attataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||||||||||||| |||||||||||||||    
T  48806384 attataagtaaaaattgacatcttagattcattcaat 48806348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 12912618 - 12912655
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattca 399  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  12912618 attattataagtaaaaattaacattttagatttattca 12912655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Original strand, 20215578 - 20215615
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  20215578 tattataagcaaaaattgacattttaggttcattcaat 20215615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Original strand, 27537065 - 27537102
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattca 399  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  27537065 attattataagcaaaaatttacattttagattcattca 27537102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 54931950 - 54931913
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattca 399  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  54931950 attattacaagtaaaaattaacattttagattcattca 54931913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 4484083 - 4484123
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||||||||||||| ||  ||||||||||||||||||||    
T  4484083 attattataagtaaaactttgcattttagattcattcaatt 4484123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 12672456 - 12672496
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||  ||||||| |||||||||||||||||||||    
T  12672456 attattataaacaaaaatttacattttagattcattcaatt 12672496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 40952479 - 40952439
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  40952479 attattataagcaaaaatttatattttagattcattcaatt 40952439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 55416309 - 55416349
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||||| | |||| ||||||||||||||    
T  55416309 attattataagtaaaaatttatatttgagattcattcaatt 55416349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 639 - 694
Target Start/End: Original strand, 33511353 - 33511407
Alignment:
Q  639 gtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 694  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||    
T  33511353 gtgtgggcttgtccctacacaaaatatttt-aatttttatttttaagtaatataat 33511407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 694
Target Start/End: Complemental strand, 27818781 - 27818725
Alignment:
Q  638 tgtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagtataat 694  Q
    ||||||||||||||||||||||||||||||| | ||| |  ||||||||||||||||    
T  27818781 tgtgtgggcttgtgcctacacaaaatatttttattttattattttaagtagtataat 27818725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 362 - 401
Target Start/End: Original strand, 24596900 - 24596939
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  24596900 attattataagtaaaaatttacattttagattcattcaat 24596939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 50466822 - 50466862
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||||| | |||||||||||||||||||    
T  50466822 attattataagtaaaaatttatattttagattcattcaatt 50466862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 35511902 - 35511865
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattca 399  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  35511902 attattataagtaaaaatcaacattttagattcattca 35511865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 359 - 399
Target Start/End: Complemental strand, 23444407 - 23444367
Alignment:
Q  359 attattattataagtaaaaattgacattttagattcattca 399  Q
    |||||||||||| | ||||||| ||||||||||||||||||    
T  23444407 attattattataggcaaaaattaacattttagattcattca 23444367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 51060672 - 51060712
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||| ||||||| |||||||||||| ||||||||    
T  51060672 attattataagcaaaaatttacattttagattaattcaatt 51060712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 615 - 690
Target Start/End: Complemental strand, 12588105 - 12588030
Alignment:
Q  615 agggatgaatgcatgcatattgttgtgtgggcttgtgcctacacaaaatattttaaatttttatttttaagtagta 690  Q
    ||||| |||||||||  | ||| |||||||||||| |  | ||||||||||||||||||||||||||||| |||||    
T  12588105 agggacgaatgcatgtgtgttgatgtgtgggcttgcgaatgcacaaaatattttaaatttttatttttaattagta 12588030  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 211
Target Start/End: Original strand, 10749142 - 10749181
Alignment:
Q  172 ttttgatactcaataatctcgaaattaatttgtatagatt 211  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  10749142 ttttgatactcaataatctagaaattaatttttatagatt 10749181  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 32124255 - 32124216
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  32124255 attattataagcaaaaattgactttttagattcattcaat 32124216  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 6032977 - 6033010
Alignment:
Q  364 tattataagtaaaaattgacattttagattcatt 397  Q
    ||||||||||||||||||| ||||||||||||||    
T  6032977 tattataagtaaaaattgatattttagattcatt 6033010  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 362 - 399
Target Start/End: Complemental strand, 29419918 - 29419881
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattca 399  Q
    ||||||||||||||||||  ||||||||||||||||||    
T  29419918 attattataagtaaaaatcaacattttagattcattca 29419881  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 357 - 402
Target Start/End: Complemental strand, 31158978 - 31158933
Alignment:
Q  357 taattattattataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||| ||||||||||||||||  |||||||||||||||| ||||    
T  31158978 taattactattataagtaaaaatctacattttagattcattaaatt 31158933  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 1302759 - 1302795
Alignment:
Q  365 attataagtaaaaattgacattttagattcattcaat 401  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  1302759 attataagtaaaaatttacattttagtttcattcaat 1302795  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 10258435 - 10258395
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||| | || ||||||||||||||||||    
T  10258435 attattataagtaaaaaataactttttagattcattcaatt 10258395  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 4613688 - 4613651
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    |||||||||||||||||||||||||| |||||||||||    
T  4613688 tattataagtaaaaattgacattttaaattcattcaat 4613651  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 7258714 - 7258676
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||||||||||| || |||||||||||||||||||||    
T  7258714 tattataagtaaaattttacattttagattcattcaatt 7258676  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 10117099 - 10117061
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||| ||||||| |||||||||||||||||||||    
T  10117099 tattataagcaaaaatttacattttagattcattcaatt 10117061  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Complemental strand, 9015947 - 9015907
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||||  | |||||||||||||||||||    
T  9015947 attattataagtaaaaatctatattttagattcattcaatt 9015907  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 23738330 - 23738363
Alignment:
Q  364 tattataagtaaaaattgacattttagattcatt 397  Q
    ||||||||||||||||||||||||||||||||||    
T  23738330 tattataagtaaaaattgacattttagattcatt 23738363  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 402
Target Start/End: Original strand, 43732144 - 43732187
Alignment:
Q  359 attattattataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||||||||||| ||||||  |||||||||||||||||||||    
T  43732144 attattattataagcaaaaatatacattttagattcattcaatt 43732187  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 358 - 404
Target Start/End: Original strand, 13304476 - 13304522
Alignment:
Q  358 aattattattataagtaaaaattgacattttagattcattcaatttt 404  Q
    |||||||||||||| |||||||| | ||||||||||| |||||||||    
T  13304476 aattattattataaataaaaatttatattttagattctttcaatttt 13304522  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Original strand, 42530503 - 42530541
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  42530503 tattataagtaaaaatttacattttagattcatttaatt 42530541  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 677
Target Start/End: Complemental strand, 42379103 - 42379060
Alignment:
Q  634 ttgttgtgtgggcttgtgcctacacaaaatattttaaattttta 677  Q
    |||| ||| ||||||||||||| |||||||||||||||||||||    
T  42379103 ttgtggtgcgggcttgtgcctatacaaaatattttaaattttta 42379060  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 13043469 - 13043431
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||| | |||||||||||||||||||    
T  13043469 tattataagtaaaaattaatattttagattcattcaatt 13043431  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 364 - 402
Target Start/End: Complemental strand, 46412817 - 46412779
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||||||||| ||||||| |||||||||||||    
T  46412817 tattataagtaaaaatttacattttggattcattcaatt 46412779  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 5595548 - 5595511
Alignment:
Q  365 attataagtaaaaattgacattttagattcattcaatt 402  Q
    |||||||||||||||  |||||||||||||||||||||    
T  5595548 attataagtaaaaatctacattttagattcattcaatt 5595511  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 364 - 401
Target Start/End: Complemental strand, 39940615 - 39940578
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaat 401  Q
    ||||||||||||||||| || |||||||||||||||||    
T  39940615 tattataagtaaaaatttactttttagattcattcaat 39940578  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 364 - 400
Target Start/End: Complemental strand, 18551390 - 18551354
Alignment:
Q  364 tattataagtaaaaattgacattttagattcattcaa 400  Q
    |||||||| |||||||| |||||||||||||||||||    
T  18551390 tattataaataaaaattaacattttagattcattcaa 18551354  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 42761462 - 42761502
Alignment:
Q  362 attattataagtaaaaattgacattttagattcattcaatt 402  Q
    ||||||||||| |||| || |||||||||||||||||||||    
T  42761462 attattataagcaaaactttacattttagattcattcaatt 42761502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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