View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263_low_10 (Length: 292)

Name: NF1263_low_10
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263_low_10
NF1263_low_10
[»] chr8 (3 HSPs)
chr8 (58-244)||(44611419-44611605)
chr8 (71-170)||(13146114-13146213)
chr8 (78-170)||(26379569-26379661)
[»] chr7 (1 HSPs)
chr7 (75-111)||(22247022-22247058)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 58 - 244
Target Start/End: Complemental strand, 44611605 - 44611419
Alignment:
Q  58 atgaagccatcgaaagctgtaaacctgaaaaatagtagcatcagaagccaaaatcctaggaagatctcaagaccaaaaagacagcagagcacaaaccaac 157  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44611605 atgaaaccatcgaaagctgtaaacctgaaaaacagtagcatcagaagccaaaatcctaggaagatctcaagaccaaaaagacagcagagcacaaaccaac 44611506  T
Q  158 agcagcagaaacaaatcactgaacctataatccactaaacctaagaaatattcattttatctttatattcaacaaccatattcttcg 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44611505 agcagcagaaacaaatcactgaacctataatccactaaacctaagaaatattcattttatctttatattcaacaaacatattcttcg 44611419  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 71 - 170
Target Start/End: Complemental strand, 13146213 - 13146114
Alignment:
Q  71 aagctgtaaacctgaaaaatagtagcatcagaagccaaaatcctaggaagatctcaagaccaaaaagacagcagagcacaaaccaacagcagcagaaaca 170  Q
    ||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  13146213 aagctgtaaacctgaaaaacaatagcatcagaagccaaaaccctaggaagatctcaagaccaaaaagacagcagagcacaaaccaatagcagcataaaca 13146114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 26379569 - 26379661
Alignment:
Q  78 aaacctgaaaaatagtagcatcagaagccaaaatcctaggaagatctcaagaccaaaaagacagcagagcacaaaccaacagcagcagaaaca 170  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||| | ||| |||||||    
T  26379569 aaacctgaaaaatagtagcatcagaagccaaaaccctagaaagatctcaagaccaaaaaaacagcagagcacaaaccaataacagtagaaaca 26379661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 111
Target Start/End: Complemental strand, 22247058 - 22247022
Alignment:
Q  75 tgtaaacctgaaaaatagtagcatcagaagccaaaat 111  Q
    |||||||||||||||||||||||||| ||||||||||    
T  22247058 tgtaaacctgaaaaatagtagcatcaaaagccaaaat 22247022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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