View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_low_14 (Length: 273)
Name: NF1263_low_14
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_14 |
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| [»] scaffold0110 (3 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 12163 - 11971
Alignment:
| Q |
49 |
tcaaatgcagctttggaaatacaatcatattaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaat |
148 |
Q |
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| T |
12163 |
tcaaatgcagctttggaaatacaatcatattaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaat |
12064 |
T |
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| Q |
149 |
actagggccactaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaacctttaggaaaaacatctct |
241 |
Q |
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| T |
12063 |
actagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaaccccttaggaaaaacatctct |
11971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 49 - 241
Target Start/End: Complemental strand, 19900 - 19708
Alignment:
| Q |
49 |
tcaaatgcagctttggaaatacaatcatattaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaat |
148 |
Q |
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| T |
19900 |
tcaaatgcagctttggaaatacaatcatattaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaat |
19801 |
T |
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| Q |
149 |
actagggccactaccctctttgctagccataccctcaacttgataagcagaagttgcaactccaaacacaaaacctttaggaaaaacatctct |
241 |
Q |
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| T |
19800 |
actagggccacgaccctctttgctagctataccctctacttgataagcagaagttgcaactccaaacacaaaccccttaggaaaaacatctct |
19708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 77 - 241
Target Start/End: Complemental strand, 27567 - 27407
Alignment:
| Q |
77 |
attaagaataattaattgagattagctaggtaagaaacacagaccaggttttttgatgaaaacatcccaaatactagggccactaccctctttgctagcc |
176 |
Q |
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| T |
27567 |
attaagaataattaattgagattag----gtaagaaacacaaaccgggttttttgatgaaaacatcccaaatactagggccacgaccctctttgctagcc |
27472 |
T |
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| Q |
177 |
ataccctcaacttgataagcagaagttgcaactccaaacacaaaacctttaggaaaaacatctct |
241 |
Q |
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| T |
27471 |
ataccctctacttgataagcagaagttgcaactccaaacacaaaccccttaggaaaaacatctct |
27407 |
T |
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