View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_low_16 (Length: 268)
Name: NF1263_low_16
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 26 - 238
Target Start/End: Complemental strand, 22362041 - 22361829
Alignment:
| Q |
26 |
accacagaatctgtcaaacgaaaacatacaaccttgtcaattctcctgttattaactgcatacatcatcgagatggtattgaataagttgtcaatgatga |
125 |
Q |
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| T |
22362041 |
accacagaatctgtcaaacgaaaacatacaaccttgtcaattctcctgttattaactgcatacatcatcgaaatggtattgaataagttgtcaatgatga |
22361942 |
T |
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| Q |
126 |
aaggtcaacaaaaaagaaaacattgattacacgatgtagtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccacaatctaatatctgtg |
225 |
Q |
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| T |
22361941 |
aaggtcagcaaaaaagaaaacattgattacacgatgtagtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccacaatctaatatctgtg |
22361842 |
T |
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| Q |
226 |
tccaacttctctg |
238 |
Q |
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| T |
22361841 |
tccaacttctctg |
22361829 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 164 - 238
Target Start/End: Original strand, 54306317 - 54306391
Alignment:
| Q |
164 |
gtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccacaatctaatatctgtgtccaacttctctg |
238 |
Q |
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| T |
54306317 |
gtgtcgaaagcaggagcctgatgccgatttccttgtcagatgaccaaattcttatatctctgtccaacttctctg |
54306391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 211
Target Start/End: Original strand, 34032758 - 34032817
Alignment:
| Q |
152 |
ttacacgatgtagtgtcgaaagcagcatcctgatgtcggtttccttgccagatgaccaca |
211 |
Q |
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| T |
34032758 |
ttacatgatgtagtgttgaaagcagtagccggatgtcggtttctttgccagatgaccaca |
34032817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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