View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263_low_19 (Length: 262)

Name: NF1263_low_19
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263_low_19
NF1263_low_19
[»] chr5 (5 HSPs)
chr5 (1-233)||(40181545-40181777)
chr5 (102-163)||(40180938-40180999)
chr5 (15-50)||(38606229-38606264)
chr5 (121-190)||(38606068-38606137)
chr5 (133-190)||(41885617-41885674)
[»] chr8 (7 HSPs)
chr8 (96-233)||(44459244-44459381)
chr8 (96-233)||(44466777-44466914)
chr8 (121-190)||(34502619-34502688)
chr8 (15-46)||(44459145-44459176)
chr8 (15-46)||(44466678-44466709)
chr8 (121-203)||(44459962-44460044)
chr8 (121-203)||(44467495-44467577)
[»] chr1 (1 HSPs)
chr1 (102-233)||(46358821-46358952)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 40181777 - 40181545
Alignment:
Q  1 tcaccgcctccaaagatttccagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctagttcaaca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181777 tcaccgcctccaaagatttacagaaagtgatgagtcttcttagtaatgcttctacacgtgggcgcaggtacaacaaagacttgaccaatctagttcaaca 40181678  T
Q  101 tcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcata 200  Q
    |||||||||| ||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40181677 tcatcaacaacactttctaatcagtgttattgaaacctcttgtcaaactaaattagctgaaaccctagaagttccacctcagaatcttatatacttcata 40181578  T
Q  201 aagatgctttggaaggataataaggatctcatc 233  Q
    |||||||||||||||||||||||||||||||||    
T  40181577 aagatgctttggaaggataataaggatctcatc 40181545  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 163
Target Start/End: Complemental strand, 40180999 - 40180938
Alignment:
Q  102 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaac 163  Q
    ||||||||| | ||| || ||||||||||| |||||||||||||||||||||| | ||||||    
T  40180999 catcaacaacattttttactcaaagttattaaaacctcttgtcaaactaaatttgttgaaac 40180938  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 50
Target Start/End: Complemental strand, 38606264 - 38606229
Alignment:
Q  15 gatttccagaaagtgatgagtcttcttagtaatgct 50  Q
    |||||||| |||||||||||||||||||||||||||    
T  38606264 gatttccataaagtgatgagtcttcttagtaatgct 38606229  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 38606137 - 38606068
Alignment:
Q  121 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 190  Q
    ||||||||||| |||||||||||||||| ||||||| | |||||| ||| ||  ||||||| || |||||    
T  38606137 tcaaagttattcaaacctcttgtcaaaccaaattagttcaaaccccaaaggtatcacctcacaaccttat 38606068  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 41885617 - 41885674
Alignment:
Q  133 aaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 190  Q
    ||||||||||||||| |||||||| | |||||| ||| ||||||||||| ||| ||||    
T  41885617 aaacctcttgtcaaattaaattagttcaaaccccaaatgttccacctcataattttat 41885674  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 44459244 - 44459381
Alignment:
Q  96 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 195  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44459244 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44459343  T
Q  196 tcataaagatgctttggaaggataataaggatctcatc 233  Q
    | |||||| || |||||||| |||| ||||| ||||||    
T  44459344 ttataaagttggtttggaagaataacaaggacctcatc 44459381  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 96 - 233
Target Start/End: Original strand, 44466777 - 44466914
Alignment:
Q  96 caacatcatcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatact 195  Q
    |||||||| |||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||    
T  44466777 caacatcaacaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaact 44466876  T
Q  196 tcataaagatgctttggaaggataataaggatctcatc 233  Q
    | |||||| || |||||||| |||| ||||| ||||||    
T  44466877 ttataaagttggtttggaagaataacaaggacctcatc 44466914  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 34502688 - 34502619
Alignment:
Q  121 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttat 190  Q
    |||||||||||||| |||||| ||||||||||||| ||||||||| ||| ||| | ||||| ||||||||    
T  34502688 tcaaagttattgaagcctcttctcaaactaaattaactgaaaccccaaaggtttcgcctcataatcttat 34502619  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 44459145 - 44459176
Alignment:
Q  15 gatttccagaaagtgatgagtcttcttagtaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  44459145 gatttccagaaagtgatgagtcttcttagtaa 44459176  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 15 - 46
Target Start/End: Original strand, 44466678 - 44466709
Alignment:
Q  15 gatttccagaaagtgatgagtcttcttagtaa 46  Q
    ||||||||||||||||||||||||||||||||    
T  44466678 gatttccagaaagtgatgagtcttcttagtaa 44466709  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 44459962 - 44460044
Alignment:
Q  121 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 203  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44459962 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44460044  T

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Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 44467495 - 44467577
Alignment:
Q  121 tcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataaag 203  Q
    ||||||||||||||||||| |  ||||||||||||  |||||||| ||| ||| | ||||| ||||||||  |||| ||||||    
T  44467495 tcaaagttattgaaacctcctcacaaactaaattaattgaaaccccaaaggtttcgcctcataatcttatccactttataaag 44467577  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 102 - 233
Target Start/End: Original strand, 46358821 - 46358952
Alignment:
Q  102 catcaacaaaactttctaatcaaagttattgaaacctcttgtcaaactaaattagctgaaaccctaaaagttccacctcagaatcttatatacttcataa 201  Q
    ||||||||| |||||  | | |||||||||||||||||||||||||||||||| | |||| ||| ||| |||| |||||| ||||||||  |||| ||||    
T  46358821 catcaacaacactttgcacttaaagttattgaaacctcttgtcaaactaaatttgttgaagccccaaaggttcaacctcataatcttatcaactttataa 46358920  T
Q  202 agatgctttggaaggataataaggatctcatc 233  Q
    || || |||||||| |||| ||||| ||||||    
T  46358921 agttggtttggaagaataacaaggacctcatc 46358952  T

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