View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_low_3 (Length: 507)
Name: NF1263_low_3
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 74 - 478
Target Start/End: Original strand, 41825244 - 41825653
Alignment:
| Q |
74 |
cataggcaatgaaaagttaatcaatttcaagttggaattgggcctttaatctttattgcatcagtccttcaatttcctccctatgtagtctatcatctca |
173 |
Q |
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| T |
41825244 |
cataggcaatgaaaagttaatcaatttcaagttggaattgggcctttaatctttattgcatcagtccttcaatttcctccctatgtagtctatcatctca |
41825343 |
T |
|
| Q |
174 |
ccatagtttgtgatttcattgttgattcttactgccacatttctaatgttgtgcatgttaccattcaattcacctctgttgaagacatttggtcagtttg |
273 |
Q |
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| T |
41825344 |
ccatagtttgtgatttcattgttgattcttactgccacatttctaatgttgtgcatgttaccattcaattcacctctgttgaagacatttggtcagtttg |
41825443 |
T |
|
| Q |
274 |
tgagaggcaatggactcctcaatgtaagcttgtgattaaagcttctatcatcaacatctt-aaacatgatttggtgcgcaagaaaccaa---tccatgtt |
369 |
Q |
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| T |
41825444 |
tgagaggcagtggactcctcaatgtaagcttctgattaaagcttgtatcatcaacatcttaaaacatgatttggtgcgcaagaaaccaatattccaagtt |
41825543 |
T |
|
| Q |
370 |
tcaggattaacaaattctatggaagacaaccattagtatgatcatttcaaaagtcactttatcaggtaac-aattaaacttgttgcttccagcaatatga |
468 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
41825544 |
tcaggacaaacaaattctatggaagacaaccattagtatgatcatttcaaaagtcactttatcaggtaacaaattaaacttattgcttccagcaatatga |
41825643 |
T |
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| Q |
469 |
gggaatttgt |
478 |
Q |
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|||||||||| |
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| T |
41825644 |
gggaatttgt |
41825653 |
T |
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