View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1263_low_4 (Length: 499)

Name: NF1263_low_4
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1263_low_4
NF1263_low_4
[»] chr4 (13 HSPs)
chr4 (164-470)||(18578119-18578424)
chr4 (1-166)||(18578625-18578791)
chr4 (4-123)||(4774521-4774641)
chr4 (4-93)||(44051000-44051089)
chr4 (4-93)||(38460502-38460591)
chr4 (5-93)||(24414911-24414999)
chr4 (90-166)||(955768-955844)
chr4 (4-86)||(3408147-3408229)
chr4 (95-166)||(49572926-49572997)
chr4 (4-67)||(50905070-50905133)
chr4 (22-91)||(51642096-51642165)
chr4 (4-67)||(19069289-19069352)
chr4 (90-166)||(51426513-51426589)
[»] chr1 (13 HSPs)
chr1 (4-114)||(19495094-19495205)
chr1 (4-93)||(1655997-1656086)
chr1 (5-93)||(25039989-25040073)
chr1 (4-114)||(22345951-22346062)
chr1 (4-86)||(7966066-7966148)
chr1 (4-93)||(38690007-38690096)
chr1 (7-114)||(4518326-4518434)
chr1 (4-107)||(13178041-13178144)
chr1 (95-166)||(36908554-36908625)
chr1 (4-86)||(46886295-46886377)
chr1 (1-86)||(9710662-9710746)
chr1 (4-52)||(22527602-22527650)
chr1 (4-67)||(46979165-46979228)
[»] chr5 (13 HSPs)
chr5 (5-93)||(33995057-33995145)
chr5 (4-94)||(24050102-24050192)
chr5 (4-120)||(24053202-24053319)
chr5 (4-93)||(25877697-25877786)
chr5 (4-119)||(4196604-4196720)
chr5 (33-94)||(30352503-30352564)
chr5 (4-53)||(7796694-7796743)
chr5 (4-86)||(13563725-13563807)
chr5 (59-114)||(31094590-31094646)
chr5 (95-166)||(34682233-34682304)
chr5 (5-86)||(27863487-27863568)
chr5 (4-56)||(28882107-28882160)
chr5 (5-86)||(38855799-38855879)
[»] chr7 (9 HSPs)
chr7 (4-93)||(19044369-19044458)
chr7 (4-93)||(20710178-20710267)
chr7 (4-93)||(34622575-34622664)
chr7 (4-101)||(12111268-12111367)
chr7 (90-165)||(37340279-37340354)
chr7 (7-86)||(10705331-10705410)
chr7 (4-52)||(42503746-42503795)
chr7 (90-166)||(10705224-10705300)
chr7 (4-52)||(17838542-17838590)
[»] chr2 (14 HSPs)
chr2 (4-86)||(45479728-45479810)
chr2 (1-86)||(41052705-41052790)
chr2 (4-166)||(41181413-41181576)
chr2 (4-139)||(12905552-12905685)
chr2 (4-86)||(24601723-24601805)
chr2 (4-86)||(24612309-24612391)
chr2 (4-94)||(43943765-43943855)
chr2 (4-93)||(9659963-9660052)
chr2 (5-93)||(28342599-28342687)
chr2 (4-67)||(7267351-7267415)
chr2 (1-93)||(25184735-25184827)
chr2 (6-68)||(439731-439793)
chr2 (98-166)||(35490656-35490724)
chr2 (4-52)||(10825336-10825384)
[»] chr6 (10 HSPs)
chr6 (4-139)||(29286232-29286368)
chr6 (4-114)||(18610140-18610251)
chr6 (4-91)||(29667740-29667827)
chr6 (4-86)||(7537270-7537352)
chr6 (4-86)||(23958974-23959056)
chr6 (5-139)||(25141014-25141149)
chr6 (5-67)||(11840158-11840220)
chr6 (4-52)||(28362638-28362686)
chr6 (4-67)||(13382731-13382793)
chr6 (4-94)||(2258361-2258451)
[»] chr3 (12 HSPs)
chr3 (4-119)||(66923-67039)
chr3 (4-93)||(6489405-6489494)
chr3 (4-67)||(2857889-2857953)
chr3 (4-52)||(47070586-47070634)
chr3 (4-86)||(9426689-9426771)
chr3 (4-52)||(600451-600499)
chr3 (4-52)||(4004962-4005010)
chr3 (4-52)||(36134190-36134238)
chr3 (4-52)||(42166319-42166367)
chr3 (95-139)||(46344940-46344984)
chr3 (4-52)||(50213575-50213623)
chr3 (4-52)||(52387917-52387965)
[»] scaffold0169 (1 HSPs)
scaffold0169 (4-130)||(1591-1718)
[»] chr8 (10 HSPs)
chr8 (4-114)||(43377200-43377311)
chr8 (4-139)||(41743893-41744030)
chr8 (4-85)||(4867710-4867791)
chr8 (4-86)||(23578518-23578600)
chr8 (4-93)||(39751137-39751226)
chr8 (7-107)||(43679458-43679559)
chr8 (21-93)||(2124254-2124326)
chr8 (4-166)||(7172518-7172684)
chr8 (95-166)||(41855344-41855415)
chr8 (4-52)||(34367029-34367077)
[»] scaffold0219 (2 HSPs)
scaffold0219 (4-86)||(20018-20101)
scaffold0219 (95-156)||(15689-15750)
[»] scaffold0199 (1 HSPs)
scaffold0199 (4-70)||(12503-12569)
[»] scaffold0618 (1 HSPs)
scaffold0618 (95-139)||(3888-3932)


Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 164 - 470
Target Start/End: Complemental strand, 18578424 - 18578119
Alignment:
Q  164 tacattacccaaataatcaacaaacacacaaactcttaacctgagatgtgataannnnnnnatnnnnnnnnntacaagtacattctatctcaccctaggg 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||         ||||||||||||||||||||||||||||    
T  18578424 tacattacccaaataatcaacaaacacacaaactcttaacctgagatgtgataatttttttataaaaaaaaatacaagtacattctatctcaccctaggg 18578325  T
Q  264 aaggttnnnnnnnnggacttatatgtatatttttaaatagaatattctttgtgcacaattgactaatccatcgaattgactagaatcacaatgaacgacg 363  Q
    ||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18578324 aaggttaaaaaaa-ggacttatatgtatatttttaaatagaatattctttgtgcacaattgactaatccatcgaattgactagaatcacaatgaacgacg 18578226  T
Q  364 gagttctcactcaacaaaagttatgcttctccatcctcacgattaagttaaagcctgaattggtgtgaacgtttcggtttttaggggaagaagatctcgg 463  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18578225 gagttctcactcaacaaatgttatgcttctccatcctcacgattaagttaaagcctgaattggtgtgaacgtttcggtttttaggggaagaagatctcgg 18578126  T
Q  464 taatatg 470  Q
    |||||||    
T  18578125 taatatg 18578119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 18578791 - 18578625
Alignment:
Q  1 atactctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggc 99  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||    
T  18578791 atactctggttgaattacaagtaaaaactagccgaaaaatggcttggaaatgcttaacaattatgcagaatccactgtctgcataaatgtttttctcggc 18578692  T
Q  100 agataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||||||||||||||||||||| || ||||||||||||||| | ||| ||||||||||||||||||||    
T  18578691 agataactgcagccgttttttgaattcctcgacagttaactgccaaggaggcaaaaatgtattttac 18578625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 4 - 123
Target Start/End: Original strand, 4774521 - 4774641
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||||||||| ||||||  |||||||     
T  4774521 ctctggttaaattacaggtaaaaactagtcgaaaaatggcttggaaatgcttaacaattatgcagaaaccactgtctgcataattgttttcctcggcagt 4774620  T
Q  103 taactgcagccgttttttaaa 123  Q
    ||||| |||||  ||||||||    
T  4774621 taactacagccaatttttaaa 4774641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 44051000 - 44051089
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||| | ||||||||| || ||||| | ||||||| ||||||    
T  44051000 ctctggtttaattacaagtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaacccactgtttgcataattgtttt 44051089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 38460591 - 38460502
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||| |||||||||  ||||||||| |||||||||||||| | ||||||||| || |||||  |||||||| ||||||    
T  38460591 ctctggtttaattacaggtaaaaactgaccgaaaaatggcttggaaatgctttagaattatgcagaacccactgactgcataattgtttt 38460502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 24414999 - 24414911
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||| ||||||| |||||||||  |||| |||| |||||||||||||| | ||||||||| || ||||| ||||||||| ||||||    
T  24414999 tctggtttaattacaggtaaaaactgtccgataaatggcttggaaatgctttagaattatgcagaacccactgtctgcataattgtttt 24414911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 955844 - 955768
Alignment:
Q  90 ttttttcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    |||| ||||||| |||||||||||| ||||| || |||||  |||||||| | |||||||||||||| |||||||||    
T  955844 ttttctcggcagttaactgcagccgatttttgaattcctcagcagttaactgccaaagaggcaaaaacgtattttac 955768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 3408147 - 3408229
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccg-aaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||||||||||||| |||| |||||| ||||||||||| || | ||||||||| || ||||| ||| |||||    
T  3408147 ctctggtttaattacaagtaaaaactggccgaaaaaatggcttggaaatg-tttagaattatgcagaacccactgtctacataa 3408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Original strand, 49572926 - 49572997
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||||||| |||||||||||| || || || ||||||||||||||| ||| | | |||||||| |||||||||    
T  49572926 tcggcagttaactgcagccgattattgaattcctcgacagttaactgtcgatggggcaaaaacgtattttac 49572997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 50905070 - 50905133
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgca 67  Q
    |||||||| ||||||| ||||||| | |||||||||| |||||||||||| | | |||||||||    
T  50905070 ctctggtttaattacaggtaaaaattggccgaaaaatggcttggaaatgcattagaattatgca 50905133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 91
Target Start/End: Complemental strand, 51642165 - 51642096
Alignment:
Q  22 taaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtt 91  Q
    ||||||||  ||||||||| | ||| |||||||| | ||||||||| || ||||||||||||||| ||||    
T  51642165 taaaaactgaccgaaaaatggtttgaaaatgctttaaaattatgcagaacccactatctgcataattgtt 51642096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 19069352 - 19069289
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccg-aaaaatagcttggaaatgcttaacaattatgca 67  Q
    |||||||| ||||||||||||||||| | || |||||| ||||||||||| || |||||||||||    
T  19069352 ctctggtttaattacaagtaaaaactggtcgaaaaaatggcttggaaatg-tttacaattatgca 19069289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 51426589 - 51426513
Alignment:
Q  90 ttttttcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    |||| ||||||  |||||||||||| ||||| || ||||||||||||||| ||| ||  | |||||| |||||||||    
T  51426589 ttttctcggcaattaactgcagccgatttttgaattcctcgacagttaactgtcgaaaggacaaaaacgtattttac 51426513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 4 - 114
Target Start/End: Complemental strand, 19495205 - 19495094
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggcaga 102  Q
    |||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| |||||||||  |||||| |||||||     
T  19495205 ctctggtttaattacaggtaaaaactggccgaaaaatagcttggaaatgcttaacaattatgcagaacccactgtctgcataatagtttttctcggcagt 19495106  T
Q  103 taactgcagccg 114  Q
    ||||||||||||    
T  19495105 taactgcagccg 19495094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 1655997 - 1656086
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||| |||||||||| ||||||||| |||||||||| ||||| || ||||||||||||||||| || ||||| ||||||||||||||||    
T  1655997 ctctgattaaattacaggtaaaaactggccgaaaaatggcttgaaagtgcttaacaattatgcagaacccactgtctgcataaatgtttt 1656086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 25039989 - 25040073
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||||||||||| ||||||||| |||||||||| |    ||||||||||||||||||||| || ||||| ||||||||||||||||    
T  25039989 tctggttaaattacaggtaaaaactggccgaaaaatgg----gaaatgcttaacaattatgcagaacccactgtctgcataaatgtttt 25040073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 22345951 - 22346062
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||| | ||||||| ||||||||| | |||||||| |||||||||||| | | ||||||||| || ||||| ||||||||| ||||||  |||||||     
T  22345951 ctctggcttaattacaggtaaaaactggtcgaaaaatggcttggaaatgcattagaattatgcagaacccactgtctgcataattgttttcctcggcagt 22346050  T
Q  103 taactgcagccg 114  Q
    ||||||||||||    
T  22346051 taactgcagccg 22346062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 7966148 - 7966066
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||||||||||| ||||||||| |||||||||| |||||||| ||||| | ||||||||| ||  |||| |||||||||    
T  7966148 ctctggttaaattacaggtaaaaactggccgaaaaatggcttggaagtgctttagaattatgcagaactcactgtctgcataa 7966066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 38690096 - 38690007
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| |||||||  |||||||| |||||||||| |||||||||||||| | ||||||| | || ||||| ||||||||| ||||||    
T  38690096 ctctggtttaattacagataaaaactggccgaaaaatggcttggaaatgctttagaattatgtagaaaccactgtctgcataattgtttt 38690007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 7 - 114
Target Start/End: Original strand, 4518326 - 4518434
Alignment:
Q  7 tggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggcagataa 105  Q
    ||||| ||||||| ||||||||| |||||||||| ||||| |||||||| | ||||||||| || | ||| ||| ||||| ||||||  ||||||| |||    
T  4518326 tggtttaattacaggtaaaaactggccgaaaaatggcttgaaaatgctttagaattatgcagaacctactgtctccataattgttttcctcggcagttaa 4518425  T
Q  106 ctgcagccg 114  Q
    |||||||||    
T  4518426 ctgcagccg 4518434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 4 - 107
Target Start/End: Original strand, 13178041 - 13178144
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggcaga 102  Q
    |||||||||||||||| ||||||||| | | |||||| |||||||| ||||| | ||||||||| || ||||| | ||||||||||||||| |||||||     
T  13178041 ctctggttaaattacaggtaaaaactggtcaaaaaatggcttggaagtgctttataattatgcagaacccactgt-tgcataaatgtttttctcggcagt 13178139  T
Q  103 taact 107  Q
    |||||    
T  13178140 taact 13178144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 36908625 - 36908554
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||||||| |||||||||||| ||||| || || |||||||||||| | | | ||||||||||||||||||||    
T  36908625 tcggcagttaactgcagccggtttttgaattcttcgacagttaactgccgaggaggcaaaaatgtattttac 36908554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 46886295 - 46886377
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccg-aaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| |||||||||||||| |||||| ||||||||||| || | ||||||||| || ||||| |||||||||    
T  46886295 ctctggtttaattacaggtaaaaactagccgaaaaaatggcttggaaatg-tttagaattatgcagaacccactgtctgcataa 46886377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 9710746 - 9710662
Alignment:
Q  1 atactctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    ||||||| ||| ||||||| |||||||||  ||||||||| ||||||||||| || | ||||||||| || ||||| |||||||||    
T  9710746 atactcttgtttaattacaggtaaaaactgaccgaaaaatggcttggaaatg-tttagaattatgcagaacccactgtctgcataa 9710662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 22527602 - 22527650
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| |||||||||||||||||||  |||||||||||    
T  22527602 ctctggtttaattacaggtaaaaactagccgaaaaaaggcttggaaatg 22527650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 46979165 - 46979228
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgca 67  Q
    ||||| || |||||||||||||||||  ||||||||||||||| ||||| || | |||||||||    
T  46979165 ctctgatttaattacaagtaaaaactgaccgaaaaatagcttgaaaatgttttagaattatgca 46979228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 93
Target Start/End: Original strand, 33995057 - 33995145
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||||||||||| ||||||||| |||||||||| |||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  33995057 tctggttaaattacatgtaaaaactggccgaaaaatggcttggaaatgcttaacaattatgcataacccactgtctgcataaatgtttt 33995145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 24050192 - 24050102
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt 94  Q
    |||||||||||||||| || |||||| |||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||||    
T  24050192 ctctggttaaattacatgtgaaaactggccgaaaaatggcttggaaatgcttaacaattatgcagaactcactatctgcataaatgttttt 24050102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 24053319 - 24053202
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggcaga 102  Q
    |||||||||||||||| ||||||||| |||||||||| ||||| |||||||| ||||||||||| ||  |||| ||||||||| ||||||| |||||||     
T  24053319 ctctggttaaattacaggtaaaaactggccgaaaaatggcttgaaaatgcttgacaattatgcagaactcactgtctgcataagtgtttttctcggcagt 24053220  T
Q  103 taactgcagccgtttttt 120  Q
    ||||||||| || |||||    
T  24053219 taactgcagacggttttt 24053202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 25877786 - 25877697
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||| ||||||||| |||||||||| |||||||||||||| | ||||||||| || ||||| ||||||||||||||||    
T  25877786 ctctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaacccactgtctgcataaatgtttt 25877697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 4196720 - 4196604
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||| ||||||| |  |||||||||||||||||||||||| | ||||||||| || ||||| ||||||||| ||||||  |||||||     
T  4196720 ctctggtttaattacaggtaaaaattgaccgaaaaatagcttggaaatgctttagaattatgcagaacccactgtctgcataattgttttcctcggcagt 4196621  T
Q  103 taactgcagccgttttt 119  Q
    ||| |||||||| ||||    
T  4196620 taattgcagccgatttt 4196604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 30352564 - 30352503
Alignment:
Q  33 cgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt 94  Q
    |||||||| ||||| |||||||||||||||||||||||| |||| ||||||||| |||||||    
T  30352564 cgaaaaatggcttgaaaatgcttaacaattatgcaaaattcactgtctgcataattgttttt 30352503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 7796743 - 7796694
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgc 53  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||||||||    
T  7796743 ctctggtttaattacaggtaaaaactggccgaaaaatagcttggaaatgc 7796694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 13563807 - 13563725
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccga-aaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||||||||| || | ||||||||| || ||||| |||||||||    
T  13563807 ctctggtttaattacaggtaaaaactagccgaaaaaatggcttggaaatg-tttataattatgcagaacccactgtctgcataa 13563725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 59 - 114
Target Start/End: Complemental strand, 31094646 - 31094590
Alignment:
Q  59 aattatgcaaaatccactatctgcataaatgtttt-ttcggcagataactgcagccg 114  Q
    ||||||||| |||||||| ||||||||| |||||| |||||||| ||||||||||||    
T  31094646 aattatgcagaatccactgtctgcataattgttttcttcggcagttaactgcagccg 31094590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 34682304 - 34682233
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||||||| |||||||||||| ||||| || ||||||||||||||| ||||| |  ||||||  |||||||||    
T  34682304 tcggcagttaactgcagccggtttttgaattcctcgacagttaactgtcaagggagcaaaagcgtattttac 34682233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 27863568 - 27863487
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    ||||||| ||||||| ||||||||| ||||||||| | ||||| ||||| |||  ||||||||| || |||||||||||||||    
T  27863568 tctggtttaattacaggtaaaaactggccgaaaaaatggcttgaaaatgtttag-aattatgcagaacccactatctgcataa 27863487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 56
Target Start/End: Complemental strand, 28882160 - 28882107
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgctta 56  Q
    |||||||| ||||||| ||||||||| ||||||||| | |||||||||||||||    
T  28882160 ctctggtttaattacaggtaaaaactggccgaaaaaatggcttggaaatgctta 28882107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 86
Target Start/End: Complemental strand, 38855879 - 38855799
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    ||||||| ||||||| |||||||||  ||||||||| ||||||||||| |  | ||||||||| || ||||| |||||||||    
T  38855879 tctggtttaattacaggtaaaaactgaccgaaaaatggcttggaaatg-tctagaattatgcagaacccactgtctgcataa 38855799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 19044458 - 19044369
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| ||||||||||||||| ||||||    
T  19044458 ctctggtttaattacaggtaaaaactagccgaaaaatggcttggaaatgcattagaattatgcaaaacccactatctgcataattgtttt 19044369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 20710178 - 20710267
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||| | | |||||||||||| ||||||||||||||| ||||||    
T  20710178 ctctggtttaattacaggtaaaaactagccgaaaaatggcttggaaatgcattagaattatgcaaaacccactatctgcataattgtttt 20710267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 34622664 - 34622575
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||||| |||||||||  ||||||||| |||||||||||||| | ||||||||| || ||||| ||||||||| ||||||    
T  34622664 ctctggtttaattacatgtaaaaactgaccgaaaaatggcttggaaatgctttagaattatgcagaacccactgtctgcataattgtttt 34622575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 101
Target Start/End: Complemental strand, 12111367 - 12111268
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatcca-ctatctgcataaatgtttt-ttcggcag 101  Q
    |||||||| |||||||||||||||||  | |||||||| |||| |||||||| | ||||||||| || ||| |||||||||||| |||||| ||||||||    
T  12111367 ctctggtttaattacaagtaaaaactgactgaaaaataacttgaaaatgctttagaattatgcataacccacctatctgcataattgttttgttcggcag 12111268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 37340354 - 37340279
Alignment:
Q  90 ttttttcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtatttta 165  Q
    |||| ||||||| |||||||| ||| ||||| || ||||||||||||||| ||| ||||| |||||| ||||||||    
T  37340354 ttttctcggcagttaactgcaaccggtttttgaattcctcgacagttaactgtcgaagagacaaaaacgtatttta 37340279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 10705410 - 10705331
Alignment:
Q  7 tggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    ||||||||||||| ||||||| |  |||||||||  ||||||| ||||| | ||||||||| || ||||| |||||||||    
T  10705410 tggttaaattacatgtaaaaattgaccgaaaaatgacttggaagtgctttagaattatgcagaacccactgtctgcataa 10705331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 42503746 - 42503795
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaa-atagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||| ||||||||||||||    
T  42503746 ctctggtttaattacaggtaaaaactggccgaaaaaatagcttggaaatg 42503795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 166
Target Start/End: Complemental strand, 10705300 - 10705224
Alignment:
Q  90 ttttttcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    |||| ||||||| |||||||||||| ||||| || | |||| |||||||| | ||| | || |||||||||||||||    
T  10705300 ttttctcggcagttaactgcagccgattttttaatttctcggcagttaactgccaaggggggaaaaatgtattttac 10705224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 17838542 - 17838590
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||||||||| ||| |||||||||  |||||||||||    
T  17838542 ctctggtttaattacaagtaaatactggccgaaaaaaggcttggaaatg 17838590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 45479728 - 45479810
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||| || ||||| |||||||||    
T  45479728 ctctggttaaattacaagtaaaaactggccgaaaaatagcttgaaaatgctttagaattatgcagaacccactgtctgcataa 45479810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 41052790 - 41052705
Alignment:
Q  1 atactctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    ||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||| | ||||||||| || ||||| |||||||||    
T  41052790 atactctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaacccactgtctgcataa 41052705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 4 - 166
Target Start/End: Complemental strand, 41181576 - 41181413
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||| |||||||||  || |||||| |||||||||||| | | ||||||||| || ||||| ||||||||| ||||||  |||||||     
T  41181576 ctctggtttaattacaggtaaaaactgcccaaaaaatggcttggaaatgcattagaattatgcataacccactgtctgcataattgttttcctcggcagt 41181477  T
Q  103 taactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||| || ||||| || || || |||||| |||||||| | | | | |||||||| |||||||||    
T  41181476 taaatgtagccggttattgaattcctcggcagttaactgccgagggggcaaaaacgtattttac 41181413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 12905685 - 12905552
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa-atgttttttcggcaga 102  Q
    ||||||||||||||   ||||||||| | |||||||| |||||||||||||| | ||||||||| ||  |||| |||||||||   ||||| |||||||     
T  12905685 ctctggttaaatta---gtaaaaactggtcgaaaaatggcttggaaatgctttagaattatgcagaactcactgtctgcataaccagttttctcggcagt 12905589  T
Q  103 taactgcagccgttttttaaactcctcgacagttaac 139  Q
    |||||||||||| ||||| || | |||| ||||||||    
T  12905588 taactgcagccgatttttcaatttctcggcagttaac 12905552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 24601805 - 24601723
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||||||||   ||||||| | |||||||| |||||||||    
T  24601805 ctctggtttaattacaagtaaaaactgaccgaaaaatggcttggaaatgcttttgaattatgtagaatccactgtctgcataa 24601723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 24612309 - 24612391
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| |||||||||||||||||  ||||||||| ||||||||||||||   ||||||| | |||||||| |||||||||    
T  24612309 ctctggtttaattacaagtaaaaactgaccgaaaaatggcttggaaatgcttttgaattatgtagaatccactgtctgcataa 24612391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 43943855 - 43943765
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt 94  Q
    |||||||| ||||||| |||||||||  ||||||||| |||||||||||||| | ||||||||| || ||| | ||||||||| |||||||    
T  43943855 ctctggtttaattacaggtaaaaactgaccgaaaaatggcttggaaatgctttagaattatgcataacccattctctgcataattgttttt 43943765  T

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Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 9659963 - 9660052
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||| | ||||||||| |||||||||| ||||||||||| || | ||||||||| || ||||| ||||||||| ||||||    
T  9659963 ctctggtttaattaaaggtaaaaactggccgaaaaatggcttggaaatgttttagaattatgcataacccactgtctgcataattgtttt 9660052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 5 - 93
Target Start/End: Complemental strand, 28342687 - 28342599
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||| |||||||  |||||||| |||||||||||| |||||||| ||| | ||||||||| || ||||| ||||||||| ||||||    
T  28342687 tctggtttaattacagataaaaactggccgaaaaatagtttggaaattctttagaattatgcagaacccactgtctgcataattgtttt 28342599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 7267351 - 7267415
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgcttaacaattatgca 67  Q
    |||||||| ||||||| ||||||||| ||||||||| | |||||||||||||| |||||||||||    
T  7267351 ctctggtttaattacaggtaaaaactggccgaaaaaatggcttggaaatgctttacaattatgca 7267415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 25184735 - 25184827
Alignment:
Q  1 atactctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||||||| ||||||| ||||||||| |||||||||| ||||||||||| || | |||||| || || ||||| | | ||||| ||||||    
T  25184735 atactctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgttttagaattatacagaacccactgtttacataattgtttt 25184827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 68
Target Start/End: Original strand, 439731 - 439793
Alignment:
Q  6 ctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaa 68  Q
    |||||| ||||||| |||||||||  ||||||||| |||||||||||||| | ||||||||||    
T  439731 ctggtttaattacaggtaaaaactgaccgaaaaatggcttggaaatgctttagaattatgcaa 439793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 35490724 - 35490656
Alignment:
Q  98 gcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    |||| |||||||||||| ||||| || || ||| |||||||| ||| | ||||||||||||||||||||    
T  35490724 gcagttaactgcagccggtttttgaattcttcggcagttaaccgtcgaggaggcaaaaatgtattttac 35490656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 10825384 - 10825336
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||  |||||||||||    
T  10825384 ctctggtttaattacaggtaaaaactggccgaaaaaatgcttggaaatg 10825336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 29286368 - 29286232
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||||||||||||| |||||||||| |||||||||||||| | ||||||||| || | ||| ||||||||| ||||||  |||||||     
T  29286368 ctctggtttaattacaagtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaacctactgtctgcataattgttttcctcggcagt 29286269  T
Q  103 taactgcagccgttttttaaactcctcgacagttaac 139  Q
    |||||||| ||| ||| | |  |||||| ||||||||    
T  29286268 taactgcaaccggtttcttatttcctcggcagttaac 29286232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 18610140 - 18610251
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||| |||||||||  ||||||||| |||||||||||||| | ||||||||| || ||||||||||||||  ||||||  |||||||     
T  18610140 ctctggtttaattacatgtaaaaactgaccgaaaaatggcttggaaatgctttagaattatgcagaacccactatctgcatagttgttttcctcggcagt 18610239  T
Q  103 taactgcagccg 114  Q
    ||| ||||||||    
T  18610240 taaatgcagccg 18610251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 91
Target Start/End: Original strand, 29667740 - 29667827
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtt 91  Q
    ||||||||||||||||  |||||||| |||||||||| |||||||| |||||   |||||||||||| ||||| ||||||||||||||    
T  29667740 ctctggttaaattacagataaaaactggccgaaaaatggcttggaagtgctttggaattatgcaaaacccactgtctgcataaatgtt 29667827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 7537352 - 7537270
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| ||||||||| |||||||||| |||||||||||||| | ||||||||| ||| |||| |||||||||    
T  7537352 ctctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaattcactgtctgcataa 7537270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 23959056 - 23958974
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| |||||| || | |||||||| |||||||||||||| | ||||||||| |||||||| |||||||||    
T  23959056 ctctggtttaattacaggtaaaatctggtcgaaaaatggcttggaaatgctttagaattatgcagaatccactgtctgcataa 23958974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 139
Target Start/End: Original strand, 25141014 - 25141149
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt-tcggcagat 103  Q
    ||||||| ||||||| ||||||  | |||||||||| ||||| |||||||| | ||||||||| || ||||| ||| ||||| ||||||  ||||||| |    
T  25141014 tctggtttaattacaggtaaaacttggccgaaaaatggcttgaaaatgctttagaattatgcagaacccactgtctccataattgttttcctcggcagtt 25141113  T
Q  104 aactgcagccgttttttaaactcctcgacagttaac 139  Q
    ||||| ||| | | ||| || |||||||||||||||    
T  25141114 aactgtagctggtatttgaattcctcgacagttaac 25141149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 11840158 - 11840220
Alignment:
Q  5 tctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgca 67  Q
    ||||||| ||||||| ||||||||| |||||||||| ||||||||||| || | |||||||||    
T  11840158 tctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgttttagaattatgca 11840220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 28362638 - 28362686
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||| |||||||||||    
T  28362638 ctctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatg 28362686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 13382793 - 13382731
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgca 67  Q
    |||||||| ||||||| ||||||||| | |||||||| ||||||||||| || |||||||||||    
T  13382793 ctctggtttaattacaggtaaaaactggtcgaaaaatggcttggaaatg-tttacaattatgca 13382731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 94
Target Start/End: Complemental strand, 2258451 - 2258361
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgttttt 94  Q
    |||||||| |||||||||||||| ||  | |||||||  |||| |||| ||| | ||||||||| ||| |||| ||||||||| |||||||    
T  2258451 ctctggtttaattacaagtaaaatctgactgaaaaatgacttgaaaattctttagaattatgcagaattcactgtctgcataattgttttt 2258361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 67039 - 66923
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa-atgttttttcggcaga 102  Q
    |||||||| ||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| || ||||| |||||||||   ||||| |||| ||     
T  67039 ctctggtttaattacaggtaaaaactgaccgaaaaatggcttggaaatgcttaacaattatgcagaacccactgtctgcataatcagttttctcggtagt 66940  T
Q  103 taactgcagccgttttt 119  Q
    |||||||||||| ||||    
T  66939 taactgcagccggtttt 66923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 6489494 - 6489405
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| |||||   ||||||||| |||||||||| |||||||||||||| | ||||||||| || ||||| ||||||||| ||||||    
T  6489494 ctctggtttaattagcggtaaaaactggccgaaaaatggcttggaaatgctttagaattatgcagaacccactgtctgcataattgtttt 6489405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 2857889 - 2857953
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgcttaacaattatgca 67  Q
    |||||||| ||||||| ||||||||| ||||||||| | |||||||||||||| |||||||||||    
T  2857889 ctctggtttaattacaggtaaaaactggccgaaaaaatggcttggaaatgctttacaattatgca 2857953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 47070634 - 47070586
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  47070634 ctctggtttaattacaggtaaaaactagccgaaaaatggcttggaaatg 47070586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 9426771 - 9426689
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| ||||||||| ||||||||| | |||||||||||||| | |||||||| | | |||||||||||||||    
T  9426771 ctctggtttaattacaggtaaaaactggccgaaaaaatggcttggaaatgctttataattatgc-agacccactatctgcataa 9426689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 600451 - 600499
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||| | |||||||||| |||||||||||    
T  600451 ctctggtttaattacaggtaaaaattggccgaaaaatggcttggaaatg 600499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 4005010 - 4004962
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||  |||||||||||    
T  4005010 ctctggtttaattacatgtaaaaactggccgaaaaaatgcttggaaatg 4004962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 36134190 - 36134238
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    ||||| || ||||||| ||||||||| ||||||||| ||||||||||||    
T  36134190 ctctgatttaattacaggtaaaaactggccgaaaaaaagcttggaaatg 36134238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Original strand, 42166319 - 42166367
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||  |||||||||||    
T  42166319 ctctggtttaattacaggtaaaaactggccgaaaaaaggcttggaaatg 42166367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 46344984 - 46344940
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaac 139  Q
    ||||||| |||||||||||| ||||| || |||||||||||||||    
T  46344984 tcggcagttaactgcagccgatttttgaattcctcgacagttaac 46344940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 50213623 - 50213575
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    ||||| || ||||||| ||||||||| ||||||||||||||| ||||||    
T  50213623 ctctgctttaattacaggtaaaaactggccgaaaaatagcttagaaatg 50213575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 52387965 - 52387917
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||  |||||||||||    
T  52387965 ctctggtttaattacaggtaaaaactggccgaaaaaaggcttggaaatg 52387917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 130
Target Start/End: Original strand, 1591 - 1718
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||| ||||||||| |||||||||| |||||||||||||  | ||||||||| || ||||| ||||||||| ||||||  || ||||     
T  1591 ctctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgctatagaattatgcagaacccactgtctgcataattgttttcctcagcagt 1690  T
Q  103 taactgcagccgttttttaaactcctcg 130  Q
    ||||||||| || ||||| || ||||||    
T  1691 taactgcagtcggtttttgaattcctcg 1718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 43377200 - 43377311
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcaga 102  Q
    |||||||| ||||||| ||||||||| |||||||||| |||||||||||||| | ||||||| | || ||||| ||||||||| ||||||  |||||||     
T  43377200 ctctggtttaattacaggtaaaaactggccgaaaaatggcttggaaatgctttagaattatgtagaacccactgtctgcataattgttttcctcggcagt 43377299  T
Q  103 taactgcagccg 114  Q
    ||| ||||||||    
T  43377300 taattgcagccg 43377311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 41744030 - 41743893
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaa-tagcttggaaatgcttaacaattatgcaaaatccactatctgcataaat-gtttt-ttcggca 100  Q
    |||||||| ||||||| ||||||||| ||||||||| | ||||||||||| |||| ||||||||| || ||||| ||||||||| | ||||| |||||||    
T  41744030 ctctggtttaattacatgtaaaaactggccgaaaaaatggcttggaaatgtttaa-aattatgcagaacccactgtctgcataattagttttcttcggca 41743932  T
Q  101 gataactgcagccgttttttaaactcctcgacagttaac 139  Q
    | ||||||||||||  ||| ||| |||||| ||||||||    
T  41743931 gttaactgcagccggatttcaaattcctcggcagttaac 41743893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Original strand, 4867710 - 4867791
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcata 85  Q
    |||| ||| ||||||||||||||||| ||| |||||| |||||||||||||| | |||||||||||| ||||| ||||||||    
T  4867710 ctctagtttaattacaagtaaaaactggccaaaaaatggcttggaaatgctttagaattatgcaaaacccactgtctgcata 4867791  T

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Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 23578600 - 23578518
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| ||||||||| || ||||||| | |||||||||||| | ||||||||| || ||||| |||||||||    
T  23578600 ctctggtttaattacaggtaaaaactggctgaaaaatggtttggaaatgctttagaattatgcagaacccactgtctgcataa 23578518  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 39751226 - 39751137
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    |||||||| ||||| |  |||||||| ||| ||||||||||||||||||| | | || |||||| |||||||| ||||||||| ||||||    
T  39751226 ctctggtttaattatagttaaaaactggccaaaaaatagcttggaaatgcattataaatatgcagaatccactgtctgcataactgtttt 39751137  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 7 - 107
Target Start/End: Complemental strand, 43679559 - 43679458
Alignment:
Q  7 tggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt-ttcggcagataa 105  Q
    ||||| ||||||| ||||||| ||||| ||||||   |||||||||||| | |||||||||||| ||||| |||| |||| | |||| |||||||| |||    
T  43679559 tggtttaattacatgtaaaaattagccaaaaaatgatttggaaatgctttagaattatgcaaaacccactgtctgtataattattttcttcggcagttaa 43679460  T
Q  106 ct 107  Q
    ||    
T  43679459 ct 43679458  T

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Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 2124326 - 2124254
Alignment:
Q  21 gtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataaatgtttt 93  Q
    ||||||| | |||||||||| |||||||||||| | | ||||||||| || ||||| ||||||||| ||||||    
T  2124326 gtaaaaagtggccgaaaaatggcttggaaatgcattagaattatgcagaacccactgtctgcataattgtttt 2124254  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 166
Target Start/End: Original strand, 7172518 - 7172684
Alignment:
Q  4 ctctggttaaattacaagtaaaaa--ctagccgaaaaatagcttggaaatgcttaacaattatgcaaaatccactatctgcataa--atgttttttcggc 99  Q
    |||||||| |||||||||||||||  |  |  ||||||  |||||||||||||| | ||||||||| || ||||| |||||||||  |  |||| |||||    
T  7172518 ctctggtttaattacaagtaaaaaaacaggttgaaaaacggcttggaaatgctttagaattatgcagaagccactgtctgcataatcagtttttctcggc 7172617  T
Q  100 agataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    || ||| |||||||| |||| ||| | |||| |||||||| ||  | | |||||||| |||||||||    
T  7172618 agttaattgcagccggttttaaaatttctcggcagttaactgttgatggggcaaaaacgtattttac 7172684  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 41855415 - 41855344
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaatgtattttac 166  Q
    ||||||| |||||||||||| ||||| || || |||||||||||| | | | |||||||||| |||||||||    
T  41855415 tcggcagttaactgcagccgatttttgaattcttcgacagttaactgccgaggaggcaaaaacgtattttac 41855344  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 34367077 - 34367029
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatg 52  Q
    |||||||| ||||||| ||||||||| |||||||||  |||||||||||    
T  34367077 ctctggtttaattacaggtaaaaactggccgaaaaaaggcttggaaatg 34367029  T

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Target: scaffold0219 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Original strand, 20018 - 20101
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaata-gcttggaaatgcttaacaattatgcaaaatccactatctgcataa 86  Q
    |||||||| ||||||| |||||||||  |||||||| | |||||||||||||| | ||||||||| || ||||| |||||||||    
T  20018 ctctggtttaattacaggtaaaaactgaccgaaaaaaaagcttggaaatgctttagaattatgcagaacccactgtctgcataa 20101  T

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Target: scaffold0219; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 95 - 156
Target Start/End: Complemental strand, 15750 - 15689
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaacagtcaaagaggcaaaaa 156  Q
    ||||||| |||||||| ||| ||||| || ||||||||||||||| ||||| ||||||||||    
T  15750 tcggcagttaactgcaaccggtttttgaattcctcgacagttaactgtcaatgaggcaaaaa 15689  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 12569 - 12503
Alignment:
Q  4 ctctggttaaattacaagtaaaaactagccgaaaaatagcttggaaatgcttaacaattatgcaaaa 70  Q
    |||||||| ||||||| ||||||||| |||||||||  ||||||||||| || | ||| ||||||||    
T  12569 ctctggtttaattacaggtaaaaactggccgaaaaaaggcttggaaatgttttagaatgatgcaaaa 12503  T

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Target: scaffold0618 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 3932 - 3888
Alignment:
Q  95 tcggcagataactgcagccgttttttaaactcctcgacagttaac 139  Q
    ||||||| |||||||||||| ||||| || |||||||||||||||    
T  3932 tcggcagttaactgcagccgatttttgaattcctcgacagttaac 3888  T

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