View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_low_5 (Length: 440)
Name: NF1263_low_5
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 29 - 428
Target Start/End: Original strand, 35631248 - 35631669
Alignment:
| Q |
29 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattcatttttatatctaaattcttgatatttaaacttttta |
128 |
Q |
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| T |
35631248 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattcatttttatatctaaattcttgatatttaaacttttta |
35631347 |
T |
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| Q |
129 |
atttgcaaggcttgacttagttttaaatttgaggaggggtgtttgcacataaatgttat----------------------atttactcaattttcacaa |
206 |
Q |
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| T |
35631348 |
atttgcaaggcttgacttagttttaaatttgaggaggggtgtttgcacataaatgttatatttgagggggtgtgattgatcatttactcatttttcacaa |
35631447 |
T |
|
| Q |
207 |
cttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagnnnnnnnnaagttaaaattaatagttataccatcat |
306 |
Q |
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| T |
35631448 |
cttgacaagctgaaacccattatgagtacattatctcatagtgagtgttactccaaaattttagttttttttaagttaaaattaatagttataccatcat |
35631547 |
T |
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| Q |
307 |
atgcatannnnnnnaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatt |
406 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35631548 |
atgcatattttttaaacaacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatactttatcttgtgaatatt |
35631647 |
T |
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| Q |
407 |
tatatggcaacaaactcatatt |
428 |
Q |
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| T |
35631648 |
tatatggcaacaaactcatatt |
35631669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 29 - 147
Target Start/End: Original strand, 16955984 - 16956103
Alignment:
| Q |
29 |
acttgcagctatcctttttgtatccctactgtccaattcttcaaatcaaatcacagagaattca-tttttatatctaaattcttgatatttaaacttttt |
127 |
Q |
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||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||||| |||||||||||||||| ||| |||||||||| | |
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| T |
16955984 |
acttgcagctatcctttttgtataactgacgtccaatcctttaaatcaaatcacagagaattcattttttatatctaaatttgagatgtttaaactttgt |
16956083 |
T |
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| Q |
128 |
aatttgcaaggcttgactta |
147 |
Q |
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|||||| |||||||| |||| |
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| T |
16956084 |
aatttgtaaggcttggctta |
16956103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 324 - 410
Target Start/End: Complemental strand, 10300272 - 10300186
Alignment:
| Q |
324 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttatcttgtgaatatttata |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | | ||||||||||| | ||| ||| |||||||||| |
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| T |
10300272 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagagattcaatcatagtctatgctgtaaatatttata |
10300186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 324 - 394
Target Start/End: Complemental strand, 10320708 - 10320638
Alignment:
| Q |
324 |
aacatattcattatgaaatttgataactttagtgtaacaaagttctcgagaaatattcaatcatattttat |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| | | | ||||||||| ||||| |
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| T |
10320708 |
aacatattcattatgaaatttgataactttagtgtaacaaagttgtcgacagaaaatcaatcatagtttat |
10320638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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