View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1263_low_6 (Length: 426)
Name: NF1263_low_6
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_6 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 1090513 - 1090910
Alignment:
| Q |
1 |
gagatgaacactttaaccgaaataaaatatgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1090513 |
gagatgaacactttaaccgaaataaaatatgaagaccaacaagattttgagcttcctttgttcaatatttctacaatgataagtgccacaaatgactttt |
1090612 |
T |
|
| Q |
101 |
cgaactataacaaacttggagaaggtggctttggaccagtgtataaggtatacatgcatgcaacaacttgaatacaacacatgagaaatctatt-gagtc |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
1090613 |
cgaactataacaaacttggagaaggtggctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtc |
1090712 |
T |
|
| Q |
200 |
tcatttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaa |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1090713 |
tcatttcctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaa |
1090812 |
T |
|
| Q |
300 |
ggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1090813 |
ggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
1090910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 1049791 - 1050187
Alignment:
| Q |
1 |
gagatgaacactttaaccgaaataaaatatgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcactttt |
100 |
Q |
| |
|
||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
1049791 |
gagatcaacactttaaccgaagagaaagatgaagaccaacaagattttgagcttcctttcttcaatatttcaacaatgataagtgccacaaatgactttt |
1049890 |
T |
|
| Q |
101 |
cgaactataacaaacttggagaaggtggctttggaccagtgtataaggtatacatgcatgcaacaacttgaatacaacacatgagaaatctattgagtct |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1049891 |
cgaactataacaaactcggagaaggtggctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttgagtct |
1049990 |
T |
|
| Q |
201 |
catttcctaacaattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaag |
300 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1049991 |
cattttctaacaattttttccaactataatatttagggtacactagctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcgaaacaag |
1050090 |
T |
|
| Q |
301 |
gatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
397 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1050091 |
gaacaagagaatttaaaaatgaagttatattatgtgcaaaacttcaacaccgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
1050187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 397
Target Start/End: Original strand, 1076735 - 1077104
Alignment:
| Q |
29 |
atgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcgaactataacaaacttggagaaggtgg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1076735 |
atgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaaggtgg |
1076834 |
T |
|
| Q |
129 |
ctttggaccagtgtataaggtatacatgcatgcaacaacttgaatacaacacatgagaaatctatt-gagtctcatttcctaacaattttttccaactat |
227 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
1076835 |
ctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactat |
1076934 |
T |
|
| Q |
228 |
aatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagtta |
327 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076935 |
aatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagtta |
1077034 |
T |
|
| Q |
328 |
tattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077035 |
tattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
1077104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 397
Target Start/End: Complemental strand, 1300285 - 1299916
Alignment:
| Q |
29 |
atgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcgaactataacaaacttggagaaggtgg |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
1300285 |
atgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcagactataataaacttggagaaggtgg |
1300186 |
T |
|
| Q |
129 |
ctttggaccagtgtataaggtatacatgcatgcaacaacttgaatacaacacatgagaaatctatt-gagtctcatttcctaacaattttttccaactat |
227 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
1300185 |
ctttggaccagtatataaggtaaacatgcatgcaacaacttgaatacaacacatgagaaatctcttagagtctcatttcctaacaattttttccaactat |
1300086 |
T |
|
| Q |
228 |
aatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagtta |
327 |
Q |
| |
|
|||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1300085 |
aatatttagggtacactagctatggatgggcgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagtta |
1299986 |
T |
|
| Q |
328 |
tattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1299985 |
tattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagagag |
1299916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 12 - 396
Target Start/End: Original strand, 1106924 - 1107304
Alignment:
| Q |
12 |
tttaaccgaaataaaatatgaagaccaacaagattttgagcttcctttcttcaatatttctacaatgataagtgccacaaatcacttttcgaactataac |
111 |
Q |
| |
|
|||| |||||| ||| |||||||| ||||||||||||||||||| ||||||||| | |||||||| || |||||| ||| |||| || || ||||| |
|
|
| T |
1106924 |
tttacccgaaaagaaagatgaagacgaacaagattttgagcttccattcttcaatctgtctacaataattgatgccaccaatgacttctccaatgataac |
1107023 |
T |
|
| Q |
112 |
aaacttggagaaggtggctttggaccagtgtataaggtatacatgcatgcaacaacttgaatacaacacatgagaaatctattgagtctcatttcctaac |
211 |
Q |
| |
|
|| |||||||||||||| |||||||| || ||||||||| ||||||| | |||||| || || | |||||||| | ||||||||| ||| ||||| |
|
|
| T |
1107024 |
aagcttggagaaggtggttttggaccggtatataaggtaaacatgca----ataacttggttataatagatgagaaaacccttgagtctctttttctaac |
1107119 |
T |
|
| Q |
212 |
aattttttccaactataatatttagggtacactacctacagatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaa |
311 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| | ||| | | ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1107120 |
aattttttctaactataaaatttagggtacacttgttctagacagacgagagattgccgtcaaaaggctttcaggaagttcaaaacaaggaacaagagaa |
1107219 |
T |
|
| Q |
312 |
tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagaga |
396 |
Q |
| |
|
||||||||||||||||| |||||| | ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
1107220 |
tttaaaaatgaagttattttatgttcgaaacttcaacaccgaaatcttgtcaaggttcttggttgttgtattcaaggagaagaga |
1107304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 253 - 396
Target Start/End: Original strand, 13854732 - 13854875
Alignment:
| Q |
253 |
atgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcg |
352 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||| | ||||| ||||||| | ||||| ||| |||||||||||||||||||| | ||||||||||| || |
|
|
| T |
13854732 |
atgggcaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacctaaagagttttaaaatgaagttatattatgtactaaacttcaacaccg |
13854831 |
T |
|
| Q |
353 |
aaatcttgttaaggttcttggttgttgcattcaaggagaagaga |
396 |
Q |
| |
|
||||||||| |||||| |||||||||| ||| |||||||||||| |
|
|
| T |
13854832 |
aaatcttgtaaaggttgttggttgttgtattgaaggagaagaga |
13854875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 264 - 391
Target Start/End: Original strand, 28419535 - 28419662
Alignment:
| Q |
264 |
attgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgtta |
363 |
Q |
| |
|
||||| |||||||| |||||||||| ||| | |||||||| |||||||||||||||||||| ||||| || | ||| | ||||||||||||||||||| |
|
|
| T |
28419535 |
attgcagtcaaaagactttcaggaaattctgagcaaggatcgaaagaatttaaaaatgaagtcatattgtgcgttaaattgcaacatcgaaatcttgtta |
28419634 |
T |
|
| Q |
364 |
aggttcttggttgttgcattcaaggaga |
391 |
Q |
| |
|
|||||||||||||||||||| ||||||| |
|
|
| T |
28419635 |
aggttcttggttgttgcattgaaggaga |
28419662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 251 - 391
Target Start/End: Original strand, 28432753 - 28432893
Alignment:
| Q |
251 |
agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat |
350 |
Q |
| |
|
|||||| ||||| |||| |||||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||||| ||||| ||| | |||||| |
|
|
| T |
28432753 |
agatggacaagaagttgcagtcaaaagactttcaggaaattcttgtcaaggattgaaagaatttaaaaatgaagtcatattgtgtgctaaattgcaacat |
28432852 |
T |
|
| Q |
351 |
cgaaatcttgttaaggttcttggttgttgcattcaaggaga |
391 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
28432853 |
cgaaatcttgttaaggttattggttgttgcattgaaggaga |
28432893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 296 - 396
Target Start/End: Complemental strand, 22689791 - 22689691
Alignment:
| Q |
296 |
acaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagag |
395 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| || || ||| | |||||||||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
22689791 |
acaaggatcaatagaatttaaaaatgaagtcatattgtgcgctaaattgcaacatcgaaatcttgttaaggttattggttgttgcattgaaggagacgag |
22689692 |
T |
|
| Q |
396 |
a |
396 |
Q |
| |
|
| |
|
|
| T |
22689691 |
a |
22689691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 252 - 396
Target Start/End: Complemental strand, 8765 - 8621
Alignment:
| Q |
252 |
gatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacatc |
351 |
Q |
| |
|
||||| ||||| ||||| ||||||||||||||| | ||||| ||||||| ||||| ||||| |||||||||||||||||| | ||||||||||| | |
|
|
| T |
8765 |
gatggacaagaaattgctgtcaaaaggctttcaaggagttctggacaaggacttaaagagtttaagaatgaagttatattatgtactaaacttcaacacc |
8666 |
T |
|
| Q |
352 |
gaaatcttgttaaggttcttggttgttgcattcaaggagaagaga |
396 |
Q |
| |
|
||||||||||||||||| |||||||||| ||| ||||||| |||| |
|
|
| T |
8665 |
gaaatcttgttaaggttgttggttgttgtattgaaggagatgaga |
8621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 23555101 - 23555233
Alignment:
| Q |
251 |
agatgggcaagagattgccgtcaaaaggctttcaggaagttcaaaacaaggatcaaaagaatttaaaaatgaagttatattatgtgcaaaacttcaacat |
350 |
Q |
| |
|
|||||| ||||| || || |||||||| ||||| || | ||| | |||||||| |||||||||| | |||||| ||||||||||| ||||||||||| |
|
|
| T |
23555101 |
agatggtcaagaaatagcagtcaaaagactttctgggaattctatacaaggattggaagaatttaagagtgaagtaatattatgtgctaaacttcaacac |
23555200 |
T |
|
| Q |
351 |
cgaaatcttgttaaggttcttggttgttgcatt |
383 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |
|
|
| T |
23555201 |
cgaaatcttgttaaggtgattggttgttgcatt |
23555233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 385
Target Start/End: Complemental strand, 23285724 - 23285651
Alignment:
| Q |
312 |
tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca |
385 |
Q |
| |
|
||||||||||||||| | || ||||||||||||||| || |||||||| ||| |||||||||| |||||||| |
|
|
| T |
23285724 |
tttaaaaatgaagttgtgttgattgcaaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca |
23285651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Complemental strand, 23285906 - 23285868
Alignment:
| Q |
112 |
aaacttggagaaggtggctttggaccagtgtataaggta |
150 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23285906 |
aaacttggggaaggtggatttggaccagtgtataaggta |
23285868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 150
Target Start/End: Original strand, 23392662 - 23392700
Alignment:
| Q |
112 |
aaacttggagaaggtggctttggaccagtgtataaggta |
150 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
23392662 |
aaacttggggaaggtggatttggaccagtgtataaggta |
23392700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 312 - 385
Target Start/End: Original strand, 23392841 - 23392914
Alignment:
| Q |
312 |
tttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattca |
385 |
Q |
| |
|
||||||||||||||| | || ||| ||||||||||| || |||||||| ||| |||||||||| |||||||| |
|
|
| T |
23392841 |
tttaaaaatgaagttgtgttgattgcgaaacttcaacaccgtaatcttgtgaagcttcttggttgctgcattca |
23392914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 340 - 394
Target Start/End: Complemental strand, 2662894 - 2662840
Alignment:
| Q |
340 |
aacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga |
394 |
Q |
| |
|
||||||||||||||||||| || ||| ||||||||||||| |||||||||||||| |
|
|
| T |
2662894 |
aacttcaacatcgaaatctcgtcaagcttcttggttgttgtattcaaggagaaga |
2662840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 396
Target Start/End: Original strand, 34328530 - 34328617
Alignment:
| Q |
309 |
gaatttaaaaatgaagttatattatgtgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaagaga |
396 |
Q |
| |
|
||||||||||| ||||| | ||| ||| ||||||||||| ||||||||||| ||| |||||||||||||| || ||||||| |||| |
|
|
| T |
34328530 |
gaatttaaaaacgaagtaaaattgattgcgaaacttcaacaccgaaatcttgtaaagcttcttggttgttgccttgaaggagaggaga |
34328617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 335 - 394
Target Start/End: Original strand, 31740276 - 31740335
Alignment:
| Q |
335 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaaggagaaga |
394 |
Q |
| |
|
||||||||||||||| |||||||| | ||| | || ||||||||||||||||||||||| |
|
|
| T |
31740276 |
tgcaaaacttcaacaccgaaatctactaaagctgctaggttgttgcattcaaggagaaga |
31740335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 31732710 - 31732764
Alignment:
| Q |
335 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga |
389 |
Q |
| |
|
||||||||||||||| |||||||| || ||| | || |||||||||||||||||| |
|
|
| T |
31732710 |
tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga |
31732764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 335 - 389
Target Start/End: Original strand, 31745611 - 31745665
Alignment:
| Q |
335 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttgcattcaagga |
389 |
Q |
| |
|
||||||||||||||| |||||||| || ||| | || |||||||||||||||||| |
|
|
| T |
31745611 |
tgcaaaacttcaacaccgaaatctagtaaagctgctaggttgttgcattcaagga |
31745665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 31696812 - 31696856
Alignment:
| Q |
335 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg |
379 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
31696812 |
tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg |
31696856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 379
Target Start/End: Original strand, 31707904 - 31707948
Alignment:
| Q |
335 |
tgcaaaacttcaacatcgaaatcttgttaaggttcttggttgttg |
379 |
Q |
| |
|
||||||||||||||| |||||||| |||||| ||||||| ||||| |
|
|
| T |
31707904 |
tgcaaaacttcaacaccgaaatctggttaagcttcttggctgttg |
31707948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 137
Target Start/End: Complemental strand, 3979676 - 3979634
Alignment:
| Q |
95 |
acttttcgaactataacaaacttggagaaggtggctttggacc |
137 |
Q |
| |
|
||||||||| | |||||||||||||||||||||| |||||||| |
|
|
| T |
3979676 |
acttttcgagcaataacaaacttggagaaggtggttttggacc |
3979634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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