View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1263_low_9 (Length: 292)
Name: NF1263_low_9
Description: NF1263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1263_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 30 - 284
Target Start/End: Original strand, 52602608 - 52602866
Alignment:
| Q |
30 |
ctgatcactcctatttttattcggtgtggagattgaatataaaaatggttacggaagtataatttctcaaattaataatg----gacaacctgatgaaat |
125 |
Q |
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| T |
52602608 |
ctgatcactcctatttttattcggtgtggagattgaatataaaaatggttacggaagtataatttctcaaattaataatgaatggacaacctgatgaaat |
52602707 |
T |
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| Q |
126 |
tatatctacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatgatgaactatcatcattttggcgtaggg |
225 |
Q |
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| T |
52602708 |
tatatgtacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatgatgaactatcatcattttgatgtgggg |
52602807 |
T |
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| Q |
226 |
actgtacaactcttatttataagaggaaccaatataaattactttgtgtctttcatctc |
284 |
Q |
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| T |
52602808 |
attggactactcttatttgtaagaggaaccaatataaattactttgtgtctttcttctc |
52602866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 99 - 284
Target Start/End: Original strand, 52623679 - 52623864
Alignment:
| Q |
99 |
aattaataatggacaacctgatgaaattatatctacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatg |
198 |
Q |
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| T |
52623679 |
aattaataatggacaacctgatgaaattatatgcacgaggaatttggtaattaagtgcatatttatatttgtggtaggattgttagaatcatgatttatg |
52623778 |
T |
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| Q |
199 |
atgaactatcatcattttggcgtagggactgtacaactcttatttataagaggaaccaatataaattactttgtgtctttcatctc |
284 |
Q |
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| T |
52623779 |
atgaactatcatcattttgaagtggggaatgaactactcttatttgtaagaggaaccaatataaattactttgtgtctttcttctc |
52623864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 52623359 - 52623436
Alignment:
| Q |
30 |
ctgatcactcctatttttattcggtgtggagattgaatataaaaatggttacggaagtataatttctcaaattaataa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52623359 |
ctgatcactcctatttttattcggtgtggagattgaatataaaaatggttacggaagtataatttctcaaattaataa |
52623436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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