View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_high_2 (Length: 439)
Name: NF12640_high_2
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 9 - 424
Target Start/End: Original strand, 37239913 - 37240329
Alignment:
| Q |
9 |
agaagcaaagggtcttgtacaattggtaggtctatataccatatttattaagaaaacactcatttcatgtatatatttatagtaaaatgttat---gcta |
105 |
Q |
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| T |
37239913 |
agaatcaaagggtcttgtacaattggtaggtctagataccatatttattaagaaaacactcatttcatgtatattttta--gtaaaatatttttaagtta |
37240010 |
T |
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| Q |
106 |
gtaattgtgtacattttaaattcagtgaagtgaatgaattctcacttaaac-agaacaaaaattatccataattgttttgtattgcagtttgaagaagca |
204 |
Q |
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| T |
37240011 |
gtaattatgtacattttaaattcagtaaactgaatgcattc--acttaaaccagaacaaaagttatccttgattattttgtattgcagtttgaagaagca |
37240108 |
T |
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| Q |
205 |
cttcatcaaatggatcctttagaaggtcttcgaaaattggtggatcctaggcttaaagaaaactatcccattgattctgttctcaaggtgggaagcattt |
304 |
Q |
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| T |
37240109 |
cttcatcgaatggatcctttagaaggtcttcgaaaattggtggatcctaggcttaaagaaaactatcccattgattctgttctcaaggtgggaagcattt |
37240208 |
T |
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| Q |
305 |
tttcttagcaaataattgaatgttacttctttttcttctcaatttgcattatataccaac-nnnnnnnnntgcagatttatgtggtatagcctttcaaat |
403 |
Q |
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| T |
37240209 |
tttcttagcaaaaaattgaatgttatttctttttcttctcaatttgcattatataccaacaaaaaaaaaatgcatatttatgtggtatagcctttcaaat |
37240308 |
T |
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| Q |
404 |
caatgtagtacataagcaaag |
424 |
Q |
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| T |
37240309 |
cattgtagtacataagcaaag |
37240329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 180 - 304
Target Start/End: Original strand, 37316304 - 37316428
Alignment:
| Q |
180 |
ttttgtattgcagtttgaagaagcacttcatcaaatggatcctttagaaggtcttcgaaaattggtggatcctaggcttaaagaaaactatcccattgat |
279 |
Q |
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| T |
37316304 |
ttttgtattgcagtttgaagaagcacttaatcagactgatcctttagaaagtcttcgcaaactggtggatcctagacttagagaagactatccaattgat |
37316403 |
T |
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| Q |
280 |
tctgttctcaaggtgggaagcattt |
304 |
Q |
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| T |
37316404 |
tctgttctaaaggtgggaagcattt |
37316428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 218 - 279
Target Start/End: Original strand, 37199169 - 37199230
Alignment:
| Q |
218 |
atcctttagaaggtcttcgaaaattggtggatcctaggcttaaagaaaactatcccattgat |
279 |
Q |
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| T |
37199169 |
atcctatagaaggtcttaaaaaactggtggatcctaggcttggagataactatccaattgat |
37199230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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