View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12640_high_4 (Length: 425)
Name: NF12640_high_4
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_high_4 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 235 - 409
Target Start/End: Original strand, 21832797 - 21832971
Alignment:
| Q |
235 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcaccaacgttaccgtctttttgtgtt |
334 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
21832797 |
caaacccgtaacaataaaaacataacctaactccaaaccctaatatttttgtgtcaccgccagcaccatttttgcactaacgttaccgtctttttgtgtt |
21832896 |
T |
|
| Q |
335 |
cacagtttctacagttttcacgacttcgcaaaaccatggttacaacaacacattcatattcatacttacctgatg |
409 |
Q |
| |
|
||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
21832897 |
cacggtttctgcagttttcacgacttcgcaaaaccatggttacaacaacacattcaaattcatacttacctgatg |
21832971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 134 - 229
Target Start/End: Original strand, 21832402 - 21832497
Alignment:
| Q |
134 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatccgttacc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
21832402 |
cgtaaatataacctaactccaaggatcattcagtaacgcaacagtacaaccataacctaactacaaaccctaacatttgtttcaccatctgttacc |
21832497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 21832285 - 21832347
Alignment:
| Q |
16 |
agtgtggagaaataagtgttgccgataatccatttcctaattgaatgaagttgaattttatgt |
78 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21832285 |
agtgtggagaaataagtgttgccgataatccatttcccaattgaatgaagttgaattttatgt |
21832347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University