View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_high_5 (Length: 420)
Name: NF12640_high_5
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 28 - 406
Target Start/End: Original strand, 31403959 - 31404336
Alignment:
| Q |
28 |
ttgacaatgctgaatatgtattcaattttgttcttttaatattttgatgcgaaacaattatttctgattaactctgatatactgttattctgcaggttct |
127 |
Q |
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| T |
31403959 |
ttgacaatgctgaatatgtattcaattttgttcttttaatattttgatgcaaaacaattatttctgattaactctgatatactgttattctgcaggttct |
31404058 |
T |
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| Q |
128 |
gaattgtacttatgtggtggttttgagattgacatggattatgaacacaccttactttgcaaggtggctcaaaaagttatcctgaaatgctttagagaaa |
227 |
Q |
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| T |
31404059 |
aaattttacttatgtggtggttttgagactgacatggattatgaacacaccttactttgcaaggtggctcaaaaagttatcctgaaatgctttagagaaa |
31404158 |
T |
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| Q |
228 |
tatcagtcactcattgcatgtttgcaacttctgtactgtgagctttctttgcatcattgctattagcctatataactcaaagagaacccgttcaatgaga |
327 |
Q |
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| T |
31404159 |
tatcagtcactcattgcatgtttgcaacttctgtactgtgagctttctttgcatcattgcta-tagcctatataactcaaagagaacccgttcaatgaga |
31404257 |
T |
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| Q |
328 |
ctttctatgtggagacaaaatttcgtacatctatttatatcatcatttatcactctcacttcattaatctaaaacatcc |
406 |
Q |
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| T |
31404258 |
ctttctatgtggagacaaaattgtgtacatctatttatatcatcatttatcactctcacttcattaatctaaaacatcc |
31404336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 23 - 206
Target Start/End: Complemental strand, 31334959 - 31334780
Alignment:
| Q |
23 |
tggctttgacaatgctgaatatgtattcaattttgttcttttaatattttgatgcgaaacaattatttctgattaactctgatatactgttattctgcag |
122 |
Q |
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| T |
31334959 |
tggctttgacattgatgaatatgtattcaattgtgttcttttaatttttttatgccaaa-aataatttctgtttaacttcgatgtactggtactctgcag |
31334861 |
T |
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| Q |
123 |
gttctgaattgtacttatgtggtggttttgagattgacatggattatgaacacaccttactttgcaaggtggctcaaaaagtta |
206 |
Q |
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| T |
31334860 |
gttctgaagtgtacttat---gtagttttgagactgacatggattaggaactcaccttacgttgcaaggtgagttaaaaagtta |
31334780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 31333429 - 31333388
Alignment:
| Q |
249 |
ttgcaacttctgtactgtgagctttctttgcatcattgctat |
290 |
Q |
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| T |
31333429 |
ttgcaacttttgtactgtgggctttttttgcatcattgctat |
31333388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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