View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_low_10 (Length: 351)
Name: NF12640_low_10
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 340
Target Start/End: Original strand, 35253035 - 35253364
Alignment:
| Q |
11 |
cagagaactaattgttgtttattctttgttcacaggaaaggatattctattgtaatgaacacgtggaagagatatgatctcttaaagcagtctatcaaac |
110 |
Q |
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| T |
35253035 |
cagagaactaattgttgtttattctttgttcacaggaaaggatattctattgtaatgaacacgtggaagagatatgatctcttaaagcagtctatcaaac |
35253134 |
T |
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| Q |
111 |
attattcatcttgtcctcgacttgaatcagtacatattgtgtggagtgaacccaatcctccttcagaaagtcttctaaaatatctgcaccatgttgtaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35253135 |
attattcatcttgtcctcgacttgaatcagtacatattgtgtggagtgaacccaatcctccttcagaaagtcttctaaaatatctgcaccatgttgtaaa |
35253234 |
T |
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| Q |
211 |
gtccaagtctagagacggacggtatgtaaagttgaggtttgatatcaacacggaagacagtttgaacaatagatttaaagaaattaaggatttggagact |
310 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35253235 |
gtccaagtctagagacggacgatatgtaaagttgaggtttgatatcaacacggaagacagtttgaacaatagatttaaagaaattaaggatttggagact |
35253334 |
T |
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| Q |
311 |
gatgctgtcttttctattgacgatgatgtc |
340 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35253335 |
gatgctgtcttttctattgacgatgatgtc |
35253364 |
T |
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