View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12640_low_11 (Length: 310)

Name: NF12640_low_11
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12640_low_11
NF12640_low_11
[»] chr4 (1 HSPs)
chr4 (4-298)||(29704754-29705048)


Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 4 - 298
Target Start/End: Complemental strand, 29705048 - 29704754
Alignment:
Q  4 tggacatcatcattattaatcatgtttgttttttcttctaacttcttcctcaccaacttcttgagaacccgcaaactagcagtcttaacatcgatggttt 103  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29705048 tggacatcatcattattaaccatgtttgttttttcttctaacttcttcctcaccaacttcttgagaacccgcaaactagcagtcttaacattgatggttt 29704949  T
Q  104 tcgagttttctttcatcacagtaggattgccagtaccacactcaatctccttgatttctgactgagctgagcaaacgggttctccctttatcttctcaga 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  29704948 tcgagttttctttcatcacagtaggattgccagtaccacactcaatctccttgatttctgaatgagctgagcaaacgggttccccctttatcttctcaga 29704849  T
Q  204 aaccacaaactcagtgtagtcctctgctgcatgttccttggtttgtgcttcagcttcctgtttctcagaagtatccttctgaccttctactttct 298  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29704848 aaccacaaactcagtgtagtcctctgctgcatgttcctcggtttgtgcttcagcttcctgtttctcagaagtatccttctgatcttctactttct 29704754  T

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