View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_low_12 (Length: 309)
Name: NF12640_low_12
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 41745448 - 41745730
Alignment:
| Q |
18 |
cttagcaacagaaagaagcagtgaagaatgaggatgacaaaaaatatgtgcaacagtgaaggacagttagacgttgcacaattcagcaaaccaatgccat |
117 |
Q |
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| T |
41745448 |
cttagcaacagaaagaagcagtgaagaatgaggatgacaaaaaatatgtgcaacagtgaaggacagttagacgatgcacaattcagcaaaccaatgccat |
41745547 |
T |
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| Q |
118 |
ggattggaatctacatagcaacagcatcacttttatgtctcatttctatgtctgcagatctcattaaaggcatcaaaacccgcaaactatggttcccttg |
217 |
Q |
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| T |
41745548 |
ggattggaatctacatagcaacagcatcacttttatgtctcatttctatgtctgcagacctcattaaaggcatcaaaacccgcaaactatggttcccttg |
41745647 |
T |
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| Q |
218 |
caaatacttttgtctcaacgcaacttccttaaccataattgctgtttctttaaaactctcggttgatctcaacactcctatgc |
300 |
Q |
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| T |
41745648 |
caaatacttttgtctcaacgcaacttccttaaccataatcgctgtttctttaaaactctcggttgatctcaacactcctatgc |
41745730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 31 - 300
Target Start/End: Complemental strand, 41740299 - 41740030
Alignment:
| Q |
31 |
agaagcagtgaagaatgaggatgacaaaaaatatgtgcaacagtgaaggacagttagacgttgcacaattcagcaaaccaatgccatggattggaatcta |
130 |
Q |
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| T |
41740299 |
agaagcattgaagaataaagatggcaaaaaacatgtgcaacagtgaaggacacttagatgacacaaatttcagcaagccaatgccatggataggagtcta |
41740200 |
T |
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| Q |
131 |
catagcaacagcatcacttttatgtctcatttctatgtctgcagatctcattaaaggcatcaaaacccgcaaactatggttcccttgcaaatacttttgt |
230 |
Q |
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| T |
41740199 |
catagcaacagcatcacttttatctcttatttcaatgtctgcagatctcattaaaggcatcaaaacccgaaaactatggttcccttgcaaatacttttgt |
41740100 |
T |
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| Q |
231 |
ctcaacgcaacttccttaaccataattgctgtttctttaaaactctcggttgatctcaacactcctatgc |
300 |
Q |
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| T |
41740099 |
ctcaatgcaacttccttaaccataatcgctgtttccgtcaaactctccgttgatctcaacactcctatgc |
41740030 |
T |
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