View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_low_17 (Length: 249)
Name: NF12640_low_17
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 239
Target Start/End: Complemental strand, 18360785 - 18360557
Alignment:
| Q |
11 |
acatcatatatactgaaaataatcttacgttttgggtactagttctgtatagcctaatatttgaagtccttttcaattaattaatttgctttcatgtgca |
110 |
Q |
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| T |
18360785 |
acatcatatatactgaaaataatcttacgttttgggtactagttctgtatagcctaatatttgaagtccttttcaattaattaatttgctttcatgtgca |
18360686 |
T |
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| Q |
111 |
ggttgttcgctttaggtttttggagaaacccaaggaagatgagttcagtcttgagctgtgagtttctctcgagcatacaattattttgttatattaaagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18360685 |
ggttgttcgctttaggtttttggagaaacccaaggaagatgagttcagtcttgagctgtgagtttctctcgagcatacaattattttgttatattaaagt |
18360586 |
T |
|
| Q |
211 |
cattttatgttaactgtagcatatctctg |
239 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
18360585 |
cattttatgttaactgtagcatatctctg |
18360557 |
T |
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