View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_low_19 (Length: 206)
Name: NF12640_low_19
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_low_19 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 40482487 - 40482690
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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| T |
40482487 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40482586 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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| T |
40482587 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40482686 |
T |
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| Q |
203 |
gctg |
206 |
Q |
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|||| |
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| T |
40482687 |
gctg |
40482690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 3 - 206
Target Start/End: Original strand, 40513161 - 40513364
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
40513161 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40513260 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513261 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40513360 |
T |
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| Q |
203 |
gctg |
206 |
Q |
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|||| |
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| T |
40513361 |
gctg |
40513364 |
T |
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