View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12640_low_9 (Length: 369)
Name: NF12640_low_9
Description: NF12640
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12640_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 353
Target Start/End: Complemental strand, 44516755 - 44516403
Alignment:
| Q |
1 |
gagtcagtggcactgattatacacatattttgcgtgttccattcagatcagaaaaaggaattctccgtaaatggatctcaaggtttgatgtctggccttt |
100 |
Q |
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| T |
44516755 |
gagtcagtggcactgattatacacatattttgcgtgttccattcagatcagaaaaaggaattctccgtaaatggatctcaaggtttgatgtctggccttt |
44516656 |
T |
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| Q |
101 |
cctggaaacttatgcagaggtaaagcccatcaacatgtatagcttaaattattaatctgacacaggattattaggaaggaatggtttcataacttagttt |
200 |
Q |
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| T |
44516655 |
cctggaaacttatgcagaggtaaagcccatcaacatgtatagcttaaattattaatctgacacaggattattaggaaggaatggtttcataacttagttt |
44516556 |
T |
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| Q |
201 |
aggcatgatgttcaaataatgcgtgatatatattgcttgtgctaccttttccacctaatatcattggttacaaatatcgacaggatgttgctagtgaaat |
300 |
Q |
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| T |
44516555 |
aggcatgatgttcaaataatgtgtgatatagattgcttgtgctaccttttacacctaatatcattggttacaaatatcgacaggatgttgctagtgaaat |
44516456 |
T |
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| Q |
301 |
ttctgccgagttacaatgttatcctgatttcatcataggaaactacagtgatg |
353 |
Q |
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| T |
44516455 |
ttctgccgagttacaatgttatcctgatttcatcataggaaactacagtgatg |
44516403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 39399010 - 39399091
Alignment:
| Q |
19 |
atacacatattttgcgtgttccattcagatcagaaaaaggaattctccgtaaatggatctcaaggtttgatgtctggccttt |
100 |
Q |
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| T |
39399010 |
atactcatattttgcgagttcctttcagatcagagaaaggaattcttcgtaaatggatctcaaggtttgatgtgtggccttt |
39399091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 280 - 342
Target Start/End: Original strand, 39399275 - 39399337
Alignment:
| Q |
280 |
acaggatgttgctagtgaaatttctgccgagttacaatgttatcctgatttcatcataggaaa |
342 |
Q |
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| T |
39399275 |
acaggacgctgctagtgaaattgctgccgagttacaaggttatcctgatttcatcattggaaa |
39399337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 21 - 162
Target Start/End: Original strand, 7301636 - 7301776
Alignment:
| Q |
21 |
acacatattttgcgtgttccattcagatcagaaaaaggaattctccgtaaatggatctcaaggtttgatgtctggcctttcctggaaacttatgcagagg |
120 |
Q |
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| T |
7301636 |
acacatagtttacgtgttgcattcagatgagtaaaaggaactat--gtaaatggatctcaaggttcgatgtgtggcctttcctgacaaattatacagagg |
7301733 |
T |
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| Q |
121 |
taaagcccatc-aacatgtatagcttaaattattaatctgaca |
162 |
Q |
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| T |
7301734 |
taaatctaatcaaacatgtatagcatgaattattaatctgaca |
7301776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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