View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12641_low_1 (Length: 484)
Name: NF12641_low_1
Description: NF12641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12641_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 83 - 466
Target Start/End: Complemental strand, 32424519 - 32424143
Alignment:
| Q |
83 |
atacataactttttagatgttcaactttaatgacattaattaaccacgatttatattcaaatatacatctggaaatcgtcgttaattgtgttaagtggat |
182 |
Q |
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| T |
32424519 |
atacataa-tttttagatgttcaaatataatgacattaattaaccacgatttatattcaaatatacatctggaaatcgttgttaattgtgttaagtggat |
32424421 |
T |
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| Q |
183 |
ggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaattttgatgtaaattggtgtatc |
282 |
Q |
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| T |
32424420 |
ggataatgaattggaacacattgttatattcattaaccacatatgtgaaccatgtcagccatctagattattgtggaattttgatgtaaattggtgtttc |
32424321 |
T |
|
| Q |
283 |
aaaatataaattctattatgtaacatcatatatattccaatagaacacaatgataacatactatactcttcattagagtgatttaattgatctataaagg |
382 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||| ||||||||| | |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
32424320 |
aaaatataaattctatcatgtaacatc----atattccaataga--acaatgataccgtactatcctcttcattagagtgatttaattgatctataaagg |
32424227 |
T |
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| Q |
383 |
gttatatggttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagctagtag |
466 |
Q |
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| T |
32424226 |
gttatatggttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagctagtag |
32424143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 391 - 466
Target Start/End: Complemental strand, 32431306 - 32431231
Alignment:
| Q |
391 |
gttgttggaatttacagctaggaggcccttcatggaatgtaggcttgggaagaagggattcaatcacagctagtag |
466 |
Q |
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| T |
32431306 |
gttgttggaatttacagctaggaggcccttcatgggatgtaggcttgggaagaagggactcaatcacagctagtag |
32431231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 38 - 89
Target Start/End: Complemental strand, 32424600 - 32424549
Alignment:
| Q |
38 |
aataaacatgtcattcaccataactttttaagtgttcaaataaacatacata |
89 |
Q |
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| T |
32424600 |
aataaacatgtcattcaccataactttttaagtgttcaaataaacatacata |
32424549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 32424599 - 32424554
Alignment:
| Q |
1 |
ataaacaggtcaatcaccataactgtttaagtgttcaaataaacat |
46 |
Q |
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| T |
32424599 |
ataaacatgtcattcaccataactttttaagtgttcaaataaacat |
32424554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 165 - 222
Target Start/End: Complemental strand, 37137126 - 37137069
Alignment:
| Q |
165 |
taattgtgttaagtggatggataatgaattggaacacattgttatattcattaaccac |
222 |
Q |
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| T |
37137126 |
taattgtgttcagtggatggctaatgaattgcgacaccttgctatattcattaaccac |
37137069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 3603535 - 3603477
Alignment:
| Q |
163 |
gttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaacca |
221 |
Q |
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| T |
3603535 |
gttaattgtgttaagtggatggttaatgaactgggataccttattacattcattaacca |
3603477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 218
Target Start/End: Original strand, 19808987 - 19809084
Alignment:
| Q |
121 |
attaaccacgatttatattcaaatatacatctggaaatcgtcgttaattgtgttaagtggatggataatgaattggaacacattgttatattcattaa |
218 |
Q |
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| T |
19808987 |
attaaccacaacttttgttcaaatatacacctgagaattgtggttgattgtgttatgtgggcggttaatgagttgtaacaccttgttatattcattaa |
19809084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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