View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12641_low_2 (Length: 333)
Name: NF12641_low_2
Description: NF12641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12641_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 323
Target Start/End: Original strand, 3016133 - 3016455
Alignment:
| Q |
1 |
cagctcaaacttcccctcatggatggtgcaattcaatgctctattgatcggttatgatctctttggttttgttgatggaacaaaaccagaacctgctgaa |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016133 |
cagctcaaactttccctcatggatggtgcaattcaatgctctattgatcggttatgatctctttggttttgttgatggaacaaaaccagaacctgctgaa |
3016232 |
T |
|
| Q |
101 |
aaacatgcagactacaactattggaggagacaagataagctcattctccatgctattttgtcctctgttgaggcctcaatcattaccatgctaggtaatg |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016233 |
aaacatgtagactacaactattggaggagacaagataagctcattctccatgctattttgtcctctgttgaggcctcaatcattaccatgctaggtaatg |
3016332 |
T |
|
| Q |
201 |
tcaaaaattcaaaggatgcctgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcggttaactcgaacctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3016333 |
tcaaaaattcaaaggatgcctgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcggttaactcgaacctc |
3016432 |
T |
|
| Q |
301 |
taaaggttccaaatccgtctctg |
323 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
3016433 |
taaaggttccaaatccgtctctg |
3016455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 221 - 315
Target Start/End: Complemental strand, 10501409 - 10501315
Alignment:
| Q |
221 |
tgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcggttaactcgaacctctaaaggttccaaatc |
315 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||| ||||||| |||||||| || ||| |||||||| ||||||| || |||||||| |
|
|
| T |
10501409 |
tgggatgtccttaacaagatgtttgcaagcaaaacaagggctcgcaccatgcatctcaagaagcaattaactcgttcctctaagggatccaaatc |
10501315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 40116282 - 40116218
Alignment:
| Q |
221 |
tgggatatccttaacaaaatgtttgcaagcaaaacaagagctcgcattatgcatcttaaagagcg |
285 |
Q |
| |
|
||||||| ||| || ||||||||||| ||||| || ||| | ||||||||||||||||| ||||| |
|
|
| T |
40116282 |
tgggataccctcaagaaaatgtttgctagcaagactagatcacgcattatgcatcttaaggagcg |
40116218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University