View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12641_low_4 (Length: 325)

Name: NF12641_low_4
Description: NF12641
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12641_low_4
NF12641_low_4
[»] chr2 (13 HSPs)
chr2 (1-318)||(30467880-30468197)
chr2 (4-318)||(30423886-30424201)
chr2 (4-318)||(30429919-30430234)
chr2 (4-132)||(30436323-30436452)
chr2 (4-120)||(30475207-30475323)
chr2 (184-318)||(30436090-30436224)
chr2 (4-93)||(30394069-30394158)
chr2 (4-120)||(30482810-30482926)
chr2 (10-95)||(23784335-23784420)
chr2 (4-93)||(30383940-30384029)
chr2 (256-318)||(30482170-30482232)
chr2 (4-120)||(8380147-8380263)
chr2 (262-318)||(30475007-30475063)
[»] chr5 (1 HSPs)
chr5 (4-77)||(41628414-41628487)
[»] chr8 (1 HSPs)
chr8 (3-92)||(15866729-15866818)


Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 30468197 - 30467880
Alignment:
Q  1 gcaaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30468197 gcaaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcagatcatcgcaacttttgtgga 30468098  T
Q  101 atattggtaacatgatctgtttgtaagagacagaggtgttaaattaagcgcatatgcattaagaattaaagtcatgttttcttataaacctaatttgcga 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||    
T  30468097 atattggtaacatgatctgtttgtaagagacagaggtgttaaattaagcgcacatgcattaagaattcaagtcatgttttcttataaacctaatttgtga 30467998  T
Q  201 tgcttgaaaagttatatgctgcagaatagataaacacatttggattctatatcctgtaaagggaaactttccttcaatttttctaaatggaatgcaggat 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30467997 tgcttgaaaagttatatgctgcagaatagataaacacatttggattctatatcctgtaaagggaaactttccttcaatttttctaaatggaatgcaggat 30467898  T
Q  301 tgattatctttctgtgct 318  Q
    ||||||||||||||||||    
T  30467897 tgattatctttctgtgct 30467880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 30424201 - 30423886
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||| || |||    
T  30424201 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcatcgcaacttttgaggtata 30424102  T
Q  104 ttggtaacatgatctgtttgtaagagac--agaggtgttaaattaagcgcatatgcattaagaattaaagtcatgttttcttataaacctaatttgcgat 201  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||| ||| |||    
T  30424101 ttggtaacatgatctgtttgtaagagacaaagaggtgttaaactaagcacatgtgcattaagaattcaaatcatgttttcttataaacctaa-ttgtgat 30424003  T
Q  202 gcttgaaaagttatatgctgcagaatagataaacacatttggattctatatcctgtaaagggaaactttccttcaatttttctaaatggaatgcaggatt 301  Q
    ||||||||||||||||| ||| |  |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||    
T  30424002 gcttgaaaagttatatgttgcggcctagataaacacaattggattctatatcaagtaaagggaaactttccttcaatttttctaaatggaatgcagggtt 30423903  T
Q  302 gattatctttctgtgct 318  Q
    ||| |||||||||||||    
T  30423902 gataatctttctgtgct 30423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 30430234 - 30429919
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||| |||||| || |||    
T  30430234 aaattttgaaggaaaggccatacttccatttcacatgatccatctgaagccaacattttctcccatttgctaatcagatcatcgcatcttttgaggtata 30430135  T
Q  104 ttggtaacatgatctgtttgtaagagac--agaggtgttaaattaagcgcatatgcattaagaattaaagtcatgttttcttataaacctaatttgcgat 201  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||||| ||| ||||||||||||| || |||||||||||||||||||||| ||| |||    
T  30430134 ttggtaacatgatctgtttgtaagagacaaagaggtgttaaactaagcacatgtgcattaagaattcaaatcatgttttcttataaacctaa-ttgtgat 30430036  T
Q  202 gcttgaaaagttatatgctgcagaatagataaacacatttggattctatatcctgtaaagggaaactttccttcaatttttctaaatggaatgcaggatt 301  Q
    ||||||| | ||||||| ||| || |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||||| |||||||||||| ||    
T  30430035 gcttgaacaattatatgttgcggactagataaacacaattggattctatatctagtaaagggaaactttccttcaatttttctacatggaatgcagggtt 30429936  T
Q  302 gattatctttctgtgct 318  Q
    ||| |||||||||||||    
T  30429935 gataatctttctgtgct 30429919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 4 - 132
Target Start/End: Complemental strand, 30436452 - 30436323
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  30436452 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcaaatcatcgcaacttttgtggaata 30436353  T
Q  104 ttggtaacatgatctg-tttgtaagagaca 132  Q
    ||||||| |||||||| |||||||||||||    
T  30436352 ttggtaatatgatctgttttgtaagagaca 30436323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 30475323 - 30475207
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    |||||||||||||||||||| || |||| |||||||||||||||||| ||||||||| ||||||||||| |||||| |||||| |||||||||  ||| |    
T  30475323 aaattttgaaggaaaggccaaacatccaattcacatgatccatctgatgacaacattctctcccatttggtaatcaaatcatcacaacttttgaagaaaa 30475224  T
Q  104 ttggtaacatgatctgt 120  Q
    |||||||||||||||||    
T  30475223 ttggtaacatgatctgt 30475207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 318
Target Start/End: Complemental strand, 30436224 - 30436090
Alignment:
Q  184 ataaacctaatttgcgatgcttgaaaagttatatgctgcagaatagataaacacatttggattctatatcctgtaaagggaaactttccttcaatttttc 283  Q
    |||||||||| ||| |||||||| |||  |||||| | | || ||||||| |||| ||||||||| ||    |||||||||||||| |||||||||||||    
T  30436224 ataaacctaacttgtgatgcttgcaaaactatatgtttcggactagataagcacaattggattctctacgtagtaaagggaaacttaccttcaatttttc 30436125  T
Q  284 taaatggaatgcaggattgattatctttctgtgct 318  Q
    |||||||||||||||||| ||||||||||||||||    
T  30436124 taaatggaatgcaggatttattatctttctgtgct 30436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 30394158 - 30394069
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaactt 93  Q
    ||||| || ||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||    
T  30394158 aaattctgcagggaaggccatacgtctatttcacatgatccatctgaagacaacatttcctcccatttgctaatcatatcattgcaactt 30394069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 120
Target Start/End: Complemental strand, 30482926 - 30482810
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    |||||||||| | |||||||||| || |||||||||||||||||| | || ||||||  ||||||||||||||||||||||| |||||||||   |||||    
T  30482926 aaattttgaatggaaggccatacatcaatttcacatgatccatctaatgataacattccctcccatttgctaatcatatcattgcaacttttaaagaata 30482827  T
Q  104 ttggtaacatgatctgt 120  Q
    |||||||||| ||||||    
T  30482826 ttggtaacatcatctgt 30482810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 23784335 - 23784420
Alignment:
Q  10 tgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaactttt 95  Q
    |||||| |||||||||||||||||||||||||||||| ||| ||||||||||| ||||| |||||||||| ||||| ||| |||||    
T  23784335 tgaagggaaggccatacgtccatttcacatgatccatttgaagacaacattttttcccaattgctaatcaaatcattgcagctttt 23784420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 30384029 - 30383940
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaactt 93  Q
    |||||||| ||| |||||||||  || |||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| |||||||    
T  30384029 aaattttgcagggaaggccatatatctatttcacatgatccatctgaagacaacattttctcccatttgttaatcaaatcattgcaactt 30383940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 30482232 - 30482170
Alignment:
Q  256 gtaaagggaaactttccttcaatttttctaaatggaatgcaggattgattatctttctgtgct 318  Q
    |||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  30482232 gtaaagggaaactaaccttcaatttttctaaatggaatgcaggatttattatctttctatgct 30482170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 120
Target Start/End: Original strand, 8380147 - 8380263
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaacttttgtggaata 103  Q
    ||||| || ||| ||||||||| ||| ||||||| |||||||||||| |||||| ||  ||||||||||||||||||||||  ||||||| || ||||      
T  8380147 aaattctgtagggaaggccatatgtctatttcacctgatccatctgatgacaacgttgactcccatttgctaatcatatcaatgcaacttgtgaggaaac 8380246  T
Q  104 ttggtaacatgatctgt 120  Q
    |||||  ||||||||||    
T  8380247 ttggtgccatgatctgt 8380263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 318
Target Start/End: Complemental strand, 30475063 - 30475007
Alignment:
Q  262 ggaaactttccttcaatttttctaaatggaatgcaggattgattatctttctgtgct 318  Q
    |||||||| ||||||||||||||| || |||||| ||||| |||| |||||||||||    
T  30475063 ggaaacttgccttcaatttttctatattgaatgccggattaattagctttctgtgct 30475007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 41628414 - 41628487
Alignment:
Q  4 aaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaat 77  Q
    ||||| |||||| |||||||||  || |||||||||||||||||||  |||||||||| ||||||||| |||||    
T  41628414 aaattctgaagggaaggccatatatctatttcacatgatccatctggagacaacatttcctcccattttctaat 41628487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 92
Target Start/End: Original strand, 15866729 - 15866818
Alignment:
Q  3 aaaattttgaaggaaaggccatacgtccatttcacatgatccatctgacgacaacattttctcccatttgctaatcatatcatcgcaact 92  Q
    |||||| |||||||||||||| || || |  ||||||| ||||||||| ||||| | || || |||||| |||||||| |||| ||||||    
T  15866729 aaaattctgaaggaaaggccaaacatcaacctcacatgttccatctgatgacaatagttccttccatttactaatcatttcattgcaact 15866818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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