View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_high_1 (Length: 520)

Name: NF12642_high_1
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_high_1
NF12642_high_1
[»] chr1 (15 HSPs)
chr1 (296-501)||(4015229-4015434)
chr1 (296-473)||(4570561-4570741)
chr1 (347-483)||(4017083-4017225)
chr1 (37-169)||(4570561-4570693)
chr1 (30-169)||(4015270-4015406)
chr1 (120-169)||(21855820-21855869)
chr1 (341-402)||(21855725-21855786)
chr1 (424-473)||(21855820-21855869)
chr1 (25-98)||(21855716-21855786)
chr1 (122-170)||(4017168-4017216)
chr1 (116-169)||(10218605-10218658)
chr1 (28-65)||(39379412-39379449)
chr1 (40-98)||(4017083-4017138)
chr1 (19-63)||(4366828-4366872)
chr1 (22-62)||(10218715-10218755)
[»] chr5 (4 HSPs)
chr5 (120-169)||(24331336-24331385)
chr5 (341-402)||(24331241-24331302)
chr5 (424-473)||(24331336-24331385)
chr5 (25-98)||(24331232-24331302)
[»] chr4 (3 HSPs)
chr4 (23-65)||(3561304-3561346)
chr4 (19-65)||(3565426-3565472)
chr4 (32-65)||(3557408-3557441)
[»] chr7 (7 HSPs)
chr7 (37-67)||(29880954-29880984)
chr7 (28-65)||(29431343-29431380)
chr7 (343-400)||(29866911-29866968)
chr7 (344-397)||(29880931-29880984)
chr7 (28-65)||(29884951-29884988)
chr7 (37-65)||(22021074-22021102)
chr7 (37-65)||(22036792-22036820)


Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 296 - 501
Target Start/End: Original strand, 4015229 - 4015434
Alignment:
Q  296 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttc 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015229 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttc 4015328  T
Q  396 acatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattgtcacatccaaaggcaaagccgaaatctctactggggtcac 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||    
T  4015329 acatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattatcacatccaaaggcaaagtcgaaatctctactagggtcac 4015428  T
Q  496 aaatat 501  Q
    ||||||    
T  4015429 aaatat 4015434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 296 - 473
Target Start/End: Complemental strand, 4570741 - 4570561
Alignment:
Q  296 ccagtttatagtaccactcaaacacacatgttcgtggtcaagaacaacaggaaaactttcaatgtttctccaaacatcaacacc---caagttgagaact 392  Q
    |||||| | ||| ||||||||| ||||| ||| |||| ||||||||  ||||||||||||||| ||||||||||||||| ||||   ||| |||||||||    
T  4570741 ccagttcacagtgccactcaaatacacaggtttgtggccaagaacagtaggaaaactttcaatatttctccaaacatcatcaccacccaaattgagaact 4570642  T
Q  393 ttcacatctgatgttgtctctcgtttacagaacgccaccactttataagctccagttgaattgtcacatccaaaggcaaag 473  Q
     | || ||||||| ||||||| | |||||| |||||||||||||||||| | |  ||||||| |||||||||||| |||||    
T  4570641 ctgacctctgatgctgtctcttgattacagtacgccaccactttataagtttcgtttgaattatcacatccaaagccaaag 4570561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 347 - 483
Target Start/End: Original strand, 4017083 - 4017225
Alignment:
Q  347 aaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcac------atctgatgttgtctctcgtttacagaacgccaccactttataa 440  Q
    |||||| ||||| ||||||||||||||| ||||||| ||||||||||||||      ||||||||||||||  || | || | | |||||||||||||||    
T  4017083 aaaactgtcaatatttctccaaacatcatcacccaaattgagaactttcacctctgaatctgatgttgtcttccgatcaccgtatgccaccactttataa 4017182  T
Q  441 gctccagttgaattgtcacatccaaaggcaaagccgaaatctc 483  Q
    | | |||||||||| ||||||||||| ||||||||||||||||    
T  4017183 gttgcagttgaattatcacatccaaatgcaaagccgaaatctc 4017225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 37 - 169
Target Start/End: Complemental strand, 4570693 - 4570561
Alignment:
Q  37 aggaaaactttcaatatttctccaaacatcacgaccacccaagttgagaactctcacctctggttgttgattaat-attgcagaacgccaccactttata 135  Q
    |||||||||||||||||||||||||||||||  ||||||||| ||||||||||| |||||| | || ||  |  | ||| ||| ||||||||||||||||    
T  4570693 aggaaaactttcaatatttctccaaacatcatcaccacccaaattgagaactctgacctct-gatgctgtctcttgattacagtacgccaccactttata 4570595  T
Q  136 agttccggttgaattatcgcatccaaaggcaaag 169  Q
    |||| || |||||||||| ||||||||| |||||    
T  4570594 agtttcgtttgaattatcacatccaaagccaaag 4570561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 30 - 169
Target Start/End: Original strand, 4015270 - 4015406
Alignment:
Q  30 gaacaacaggaaaactttcaatatttctccaaacatcacgaccacccaagttgagaactctcacctctggttgttgattaatattg-cagaacgccacca 128  Q
    |||||||||||||||||||||| |||||||||||||||    ||||||||||||||||| |||| |||| | ||||  |    ||  |||||||||||||    
T  4015270 gaacaacaggaaaactttcaatgtttctccaaacatcaa---cacccaagttgagaactttcacatctgat-gttgtctctcgtttacagaacgccacca 4015365  T
Q  129 ctttataagttccggttgaattatcgcatccaaaggcaaag 169  Q
    ||||||||| ||| ||||||||||| |||||||||||||||    
T  4015366 ctttataagctccagttgaattatcacatccaaaggcaaag 4015406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 21855820 - 21855869
Alignment:
Q  120 acgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 169  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  21855820 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 21855869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 21855725 - 21855786
Alignment:
Q  341 aacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatctg 402  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||| |||| |||| ||||    
T  21855725 aacaggaaaactttcgatgtttctccaaacatcatcacccatgttgataactctcacctctg 21855786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 21855820 - 21855869
Alignment:
Q  424 acgccaccactttataagctccagttgaattgtcacatccaaaggcaaag 473  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  21855820 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 21855869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 21855716 - 21855786
Alignment:
Q  25 aaaaggaacaacaggaaaactttcaatatttctccaaacatcacgaccacccaagttgagaactctcacctctg 98  Q
    |||||||| ||||||||||||||| || ||||||||||||||   | |||||| ||||| ||||||||||||||    
T  21855716 aaaaggaataacaggaaaactttcgatgtttctccaaacatc---atcacccatgttgataactctcacctctg 21855786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 4017168 - 4017216
Alignment:
Q  122 gccaccactttataagttccggttgaattatcgcatccaaaggcaaagc 170  Q
    |||||||||||||||||| | ||||||||||| |||||||| |||||||    
T  4017168 gccaccactttataagttgcagttgaattatcacatccaaatgcaaagc 4017216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 10218658 - 10218605
Alignment:
Q  116 cagaacgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 169  Q
    |||||||||||||||||| |  |||||||||||||| | |||||||| ||||||    
T  10218658 cagaacgccaccactttaaagcttccggttgaattaacacatccaaatgcaaag 10218605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 39379412 - 39379449
Alignment:
Q  28 aggaacaacaggaaaactttcaatatttctccaaacat 65  Q
    ||||||||| || |||||||||||||||||||||||||    
T  39379412 aggaacaaccgggaaactttcaatatttctccaaacat 39379449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 40 - 98
Target Start/End: Original strand, 4017083 - 4017138
Alignment:
Q  40 aaaactttcaatatttctccaaacatcacgaccacccaagttgagaactctcacctctg 98  Q
    |||||| ||||||||||||||||||||   | ||||||| ||||||||| |||||||||    
T  4017083 aaaactgtcaatatttctccaaacatc---atcacccaaattgagaactttcacctctg 4017138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 4366828 - 4366872
Alignment:
Q  19 caaacgaaaaggaacaacaggaaaactttcaatatttctccaaac 63  Q
    |||| ||| |||||||| ||||||||||||||||| |||||||||    
T  4366828 caaatgaagaggaacaataggaaaactttcaatatctctccaaac 4366872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 10218755 - 10218715
Alignment:
Q  22 acgaaaaggaacaacaggaaaactttcaatatttctccaaa 62  Q
    |||| ||||||| ||||||||| ||||||||||||||||||    
T  10218755 acgataaggaaccacaggaaaagtttcaatatttctccaaa 10218715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 24331336 - 24331385
Alignment:
Q  120 acgccaccactttataagttccggttgaattatcgcatccaaaggcaaag 169  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  24331336 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 24331385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 402
Target Start/End: Original strand, 24331241 - 24331302
Alignment:
Q  341 aacaggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatctg 402  Q
    ||||||||||||||| |||||||||||||||||| |||||| ||||| |||| |||| ||||    
T  24331241 aacaggaaaactttcgatgtttctccaaacatcatcacccatgttgataactctcacctctg 24331302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 424 - 473
Target Start/End: Original strand, 24331336 - 24331385
Alignment:
Q  424 acgccaccactttataagctccagttgaattgtcacatccaaaggcaaag 473  Q
    |||||||||||||||||| ||| |||||||| ||||||||||||||||||    
T  24331336 acgccaccactttataagttccggttgaattatcacatccaaaggcaaag 24331385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 24331232 - 24331302
Alignment:
Q  25 aaaaggaacaacaggaaaactttcaatatttctccaaacatcacgaccacccaagttgagaactctcacctctg 98  Q
    |||||||| ||||||||||||||| || ||||||||||||||   | |||||| ||||| ||||||||||||||    
T  24331232 aaaaggaataacaggaaaactttcgatgtttctccaaacatc---atcacccatgttgataactctcacctctg 24331302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 3561304 - 3561346
Alignment:
Q  23 cgaaaaggaacaacaggaaaactttcaatatttctccaaacat 65  Q
    |||| |||||||| |||||||||||||||||||||||||||||    
T  3561304 cgaagaggaacaataggaaaactttcaatatttctccaaacat 3561346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 3565472 - 3565426
Alignment:
Q  19 caaacgaaaaggaacaacaggaaaactttcaatatttctccaaacat 65  Q
    |||||||| ||||||| | || |||||||||||||||||||||||||    
T  3565472 caaacgaagaggaacagccgggaaactttcaatatttctccaaacat 3565426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 3557441 - 3557408
Alignment:
Q  32 acaacaggaaaactttcaatatttctccaaacat 65  Q
    |||||||| |||||||||||||||||||||||||    
T  3557441 acaacagggaaactttcaatatttctccaaacat 3557408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 37 - 67
Target Start/End: Complemental strand, 29880984 - 29880954
Alignment:
Q  37 aggaaaactttcaatatttctccaaacatca 67  Q
    |||||||||||||||||||||||||||||||    
T  29880984 aggaaaactttcaatatttctccaaacatca 29880954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 29431343 - 29431380
Alignment:
Q  28 aggaacaacaggaaaactttcaatatttctccaaacat 65  Q
    |||||||||||| ||||||||||||| |||||||||||    
T  29431343 aggaacaacagggaaactttcaatatctctccaaacat 29431380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 343 - 400
Target Start/End: Complemental strand, 29866968 - 29866911
Alignment:
Q  343 caggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcacatc 400  Q
    |||||||||||||||| |||||||||  |||| |||| || ||||||||| |||||||    
T  29866968 caggaaaactttcaatatttctccaacgatcatcaccgaaattgagaactctcacatc 29866911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 397
Target Start/End: Complemental strand, 29880984 - 29880931
Alignment:
Q  344 aggaaaactttcaatgtttctccaaacatcaacacccaagttgagaactttcac 397  Q
    ||||||||||||||| ||||||||||||||| |||| |  ||||||||| ||||    
T  29880984 aggaaaactttcaatatttctccaaacatcatcaccaagattgagaactctcac 29880931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 29884988 - 29884951
Alignment:
Q  28 aggaacaacaggaaaactttcaatatttctccaaacat 65  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  29884988 aggaacaactggaaaactttcaatatctctccaaacat 29884951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 22021102 - 22021074
Alignment:
Q  37 aggaaaactttcaatatttctccaaacat 65  Q
    |||||||||||||||||||||||||||||    
T  22021102 aggaaaactttcaatatttctccaaacat 22021074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 37 - 65
Target Start/End: Complemental strand, 22036820 - 22036792
Alignment:
Q  37 aggaaaactttcaatatttctccaaacat 65  Q
    |||||||||||||||||||||||||||||    
T  22036820 aggaaaactttcaatatttctccaaacat 22036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University