View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12642_high_10 (Length: 282)
Name: NF12642_high_10
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12642_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 19252747 - 19252670
Alignment:
| Q |
76 |
cgtacggaaatgggaagaacaagtcaacaacaagccattgttgttggtaaaagggtacctgaaaaaggataaggtgacaac |
156 |
Q |
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| T |
19252747 |
cgtacggaaatgggaagaacaagtcaacaa---gccattgttgttggtaaaagggtacctgaaaaaggataaggtgacaac |
19252670 |
T |
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Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 208 - 264
Target Start/End: Complemental strand, 19252618 - 19252562
Alignment:
| Q |
208 |
gggtttataggaatattgagggaagacaaggtggtgagtgtagttgtatgagataat |
264 |
Q |
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| T |
19252618 |
gggtttataggaatattgagggaagacaaggtggtgagtgtagttgtatgagataat |
19252562 |
T |
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