View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_high_12 (Length: 252)

Name: NF12642_high_12
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_high_12
NF12642_high_12
[»] chr3 (13 HSPs)
chr3 (18-242)||(23499420-23499644)
chr3 (18-236)||(23478941-23479159)
chr3 (18-242)||(23447652-23447876)
chr3 (18-236)||(23454417-23454635)
chr3 (18-242)||(23468883-23469107)
chr3 (18-234)||(23352299-23352515)
chr3 (18-241)||(23440273-23440496)
chr3 (18-241)||(23472802-23473025)
chr3 (18-181)||(23463639-23463802)
chr3 (18-181)||(23386634-23386797)
chr3 (18-236)||(23405008-23405226)
chr3 (18-149)||(23398297-23398427)
chr3 (155-187)||(35768945-35768977)
[»] scaffold0201 (1 HSPs)
scaffold0201 (18-241)||(11803-12026)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23499420 - 23499644
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23499420 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctctaacaaaatctttaccctgtccactcaaca 23499519  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23499520 agcatgcgatgtctagaaatatggccttttgacaacgatctaagtcagcataactaaattttaacacattataaatcttttgattgggaatcttttggag 23499619  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    ||||||||||||||||||| |||||    
T  23499620 ctttttcagttcattttcccatgct 23499644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23478941 - 23479159
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23478941 atgagagctttatctagaaggacgtctatcccacttattgcaaagaaatcagaagcttccagtagatctcttacaaaatctttaccctgtccactcaaca 23479040  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  23479041 agcatgcgatgtctagaaatatggccttttgacaacgatctaactcatcataactcaattttaacacattatgaatttttcgattgggaatcttttggag 23479140  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||||||||    
T  23479141 ctttttcaattcattttcc 23479159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23447652 - 23447876
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| | | |||| ||||||    
T  23447652 atgagagccttatctagaaggacttctatcccacttattgcaaagaactcacaagcttccaatagatctcttacaaaagttttatcttttccattcaaca 23447751  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  23447752 agcatgcgatgtctagaaatatggccttctgacaatgatctaaatcatcataactcaattttaacacatcataaatctttcgattgggaatcttttggag 23447851  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    ||||||||||||||||||| |||||    
T  23447852 ctttttcagttcattttcccatgct 23447876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23454417 - 23454635
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| || | |||||| |||  ||||| || | | |||| ||    
T  23454417 atgagagatttatctagaaggacttctatcccacttactgcaaagaactcacaagcttccaaaagttttcttacgaaagatttactctcttctctcagca 23454516  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||    
T  23454517 agcatgcgttgtctagaaatatggccttttgacaacaatctaagtcatcataactcaattttaatacattgtaaattttcgtattgggaatcttttggag 23454616  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||||||||    
T  23454617 ctttttcaattcattttcc 23454635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23468883 - 23469107
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||   | |||||||||||| || | ||||||||||||||  || | | |||||||    
T  23468883 atgagagctttatctagaaggacttctatcccaattgttgcaaagaatcgacaagcttccaatacatgttttacaaaatctttatgctcttctctcaaca 23468982  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| |||| ||   ||||||||||||||||||    
T  23468983 agcatgcgatatctagaaatatggccttttgacaacaatctaagtcatcataactcaattttaacacattaaaaattttcctattgggaatcttttggag 23469082  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    | |||||| |||||| ||| |||||    
T  23469083 cattttcaattcattgtcccatgct 23469107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 23352299 - 23352515
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||| | || | |||||  |  ||||| || ||| || || |    
T  23352299 atgagagctttatctagaaggacttcaatcccactttttgcaaagaactcacaagcttccaacatatgtgttacatgaaatttactctctcctctaaaaa 23352398  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||| ||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||| ||||| ||   ||||||||||||||| ||    
T  23352399 agcatgtgatatctagaaatatggccttttgagaacaatctaagtcatcataactcaattttaacacattgtaaattttcctattgggaatcttttgtag 23352498  T
Q  218 ctttttcagttcatttt 234  Q
    |||||||| ||||||||    
T  23352499 ctttttcaattcatttt 23352515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23440273 - 23440496
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||||||||||| |||||| ||||||||||||  ||||||||||| | |||||||||| | |||| ||| |||   ||||  || ||| ||||| |    
T  23440273 atgagagctttatctaaaaggacttctatcccactttctgcaaagaacttacaagcttccaacaaatctattataaatattttatgctctcctctcaaaa 23440372  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||| |||||||||||||| | ||  |||||||||||||||||| |||||||| ||  ||||||| ||   ||| |||||||||| |||    
T  23440373 agcatgcaatatctaaaaatatggccttttaaaaaaaatctaagtcatcataactgaattttaacacggtataaattttcctatttggaatcttttcgag 23440472  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  23440473 ctttttcaattcattttcccatgc 23440496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23472802 - 23473025
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||||||||||| || ||| ||||||||||||  ||||||||||||| |||||||||| | |||| ||| |||   ||||  || ||| ||||| |    
T  23472802 atgagagctttatctaaaacgacttctatcccactttctgcaaagaactcacaagcttccaacaaatctattataaatattttatgctctcctctcaaaa 23472901  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||| ||||||||||| |||| ||  |||||||||||||||||| |||||||| ||  ||||||| ||   ||| |||||||||| |||    
T  23472902 agcatgcaatatctaaaaatatggcctgttgaaaaaaatctaagtcatcataactgaattttaacacgatataaattttcctatttggaatcttttcgag 23473001  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  23473002 ctttttcaattcattttcccatgc 23473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 23463639 - 23463802
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||| |||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||||   ||||  || ||| |||||||    
T  23463639 atgaaagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaagaaatgtatcacaaacattttattctctcctctcaaca 23463738  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaa 181  Q
    |||||||||| |||||||||||| |||||||| ||  |||||||| ||||||||||||||||||    
T  23463739 agcatgcgatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaa 23463802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 23386634 - 23386797
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||| |||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||||   ||||   | ||| |||||||    
T  23386634 atgaaagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaagaaatgtatcacaaatattttattatctcctctcaaca 23386733  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaa 181  Q
    |||||||||| |||||||||||| |||||||| ||  |||||||| ||||||||||||||||||    
T  23386734 agcatgcgatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaa 23386797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23405008 - 23405226
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||     ||||   | ||| |||||||    
T  23405008 atgagagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaacaaatgtatcacagccattttattatctcctctcaaca 23405107  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||||||||||| |||||||| ||  |||||||| |||||||||||||||||| | ||| | ||| |    ||| |||||||||| |||    
T  23405108 agcatgcaatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaacatattgttaatttccccatttggaatcttttcgag 23405207  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||| ||||    
T  23405208 ctttttcaattcatcttcc 23405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 23398297 - 23398427
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||    |||||||| | |||| ||||||||   |||  || ||| |||||      
T  23398297 atgagagcttt-tctagaaggacttctatcccacttattgcaaagaactctcttgcttccaacatatctgttacaaaaaaattattctctcctctcaaac 23398395  T
Q  118 agcatgcgatgtctagaaatatggccttttga 149  Q
    ||||| |||| ||||||||| |||||||||||    
T  23398396 agcattcgatatctagaaatgtggccttttga 23398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35768977 - 35768945
Alignment:
Q  155 atctaagtcatcataactcaattttaatacatt 187  Q
    ||||||||||||||||||||||||||| |||||    
T  35768977 atctaagtcatcataactcaattttaacacatt 35768945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 11803 - 12026
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||||| | || | ||||| ||  || |  || ||| ||  | |    
T  11803 atgagagctttatctagaaggacttttaccccacttattgcatagaactcacaagcttccaacatatgtgttacataaatttcatgctttcctctataaa 11902  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||| || |||||||||||||||| |  |  ||||||||||||||||||||||||||| ||||| ||||| |    ||| |||||||||| |||    
T  11903 agcatgcgatatccagaaatatggccttttcagtaaaatctaagtcatcataactcaattttaacacattgtaaatttccccatttggaatctttttgag 12002  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  12003 ctttttcaattcattttcccatgc 12026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University