View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_high_4 (Length: 421)

Name: NF12642_high_4
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_high_4
NF12642_high_4
[»] chr3 (15 HSPs)
chr3 (18-411)||(26815011-26815401)
chr3 (197-408)||(26824092-26824303)
chr3 (198-411)||(26818319-26818535)
chr3 (18-155)||(26823928-26824065)
chr3 (18-153)||(26818112-26818248)
chr3 (207-398)||(28419764-28419960)
chr3 (206-247)||(10926340-10926381)
chr3 (177-298)||(16910945-16911065)
chr3 (177-298)||(23297688-23297808)
chr3 (177-298)||(24197139-24197259)
chr3 (206-253)||(6091742-6091789)
chr3 (208-247)||(10938378-10938417)
chr3 (206-251)||(6080672-6080717)
chr3 (206-251)||(6119858-6119903)
chr3 (207-247)||(31279829-31279869)
[»] chr8 (1 HSPs)
chr8 (207-355)||(11860804-11860952)
[»] scaffold0257 (1 HSPs)
scaffold0257 (206-298)||(24852-24944)
[»] chr1 (2 HSPs)
chr1 (210-255)||(27553958-27554003)
chr1 (206-247)||(24295200-24295241)
[»] chr5 (2 HSPs)
chr5 (210-260)||(24834308-24834358)
chr5 (206-254)||(26315587-26315635)
[»] chr7 (1 HSPs)
chr7 (206-255)||(19199165-19199214)


Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 18 - 411
Target Start/End: Original strand, 26815011 - 26815401
Alignment:
Q  18 ttacttaaaagatatttaatgacaattctaattttaaaaagagttttttgcaactccaaaagcacttaaagctatttcattgattattattttttaagaa 117  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815011 ttacttaaaagatatttaatgacaattctaattttaaa--gagttttttgcaactccaaaagcacttaaagctatttcattgattattattttttaagaa 26815108  T
Q  118 ttaaagctatttaattggtgtaaggagagtgttagttttgtgtaaagtgataaaaacattttgttacatgcaaagggctgaggtgtagaaatatggctca 217  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  26815109 ttaaagctatttaattggtgtaaggagagtgttagttttgtataaagtgataaaaacattttgttacatgcatagggctgaggtgtagaaatatggctca 26815208  T
Q  218 aattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggtaagccacttttcaatcttcccaaattttct 317  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815209 aatttttaagtttgtttatgttatgattatatttatttacctgtttctggttttaacgaatgttgatggtaagccacttttcaatcttcccaaattttct 26815308  T
Q  318 tctatactttgtaaacaatatttcatcctatctagttatattctttttattctatttttcattacagcgggtattagatgtcatgatgtctctg 411  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26815309 tctatactttgtaaacaatatttcatcctatctagttatattc-ttttattctatttttcattacagcgggtattagatgtcatgatgtctctg 26815401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 197 - 408
Target Start/End: Original strand, 26824092 - 26824303
Alignment:
Q  197 gaggtgtagaaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggtaagcc-act 295  Q
    ||||||||| ||||||||||||||||| |  ||  |||| ||||||| ||||||||||||||| |||||  |||  |||||||||||||||||||| |||    
T  26824092 gaggtgtaggaatatggctcaaattttaattttattttacgttatgactatatttatttacctatttcttgtttcgacgaatgttgatggtaagcctact 26824191  T
Q  296 tttcaatcttcccaaattttcttctatactttgtaaacaatatttcatcctatctagttatattctttttattcta-tttttcattacagcgggtattag 394  Q
    ||||||||||| ||||||| ||||| |||||| ||||||||||||||||  || ||||||||||| ||||| |||| |||||||||||||||||||| ||    
T  26824192 tttcaatcttctcaaatttccttctttactttataaacaatatttcatctcat-tagttatattc-ttttaatctattttttcattacagcgggtatcag 26824289  T
Q  395 atgtcatgatgtct 408  Q
    ||||| | ||||||    
T  26824290 atgtcgtaatgtct 26824303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 198 - 411
Target Start/End: Original strand, 26818319 - 26818535
Alignment:
Q  198 aggtgtagaaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggt--aagccact 295  Q
    |||||||| |||||||||||||||||||| ||| |||||||||||| ||||||||||||||| |||||  ||| ||||| ||||||||||  || |||||    
T  26818319 aggtgtaggaatatggctcaaattttcaaatttttttatgttatgactatatttatttacctatttcttgtttcaacgactgttgatggtaaaacccact 26818418  T
Q  296 tttcaatcttcccaaattttcttctatactttgtaa--acaatatttcatcctatctagttatattctttttattcta-tttttcattacagcgggtatt 392  Q
    ||||||||||||||||||  ||||| || |||||||  | |||||||||| ||   || |||||||| |||||||||| ||||||||||||||||||||     
T  26818419 tttcaatcttcccaaattcccttctttaatttgtaattaaaatatttcat-ctcagtatttatattc-ttttattctattttttcattacagcgggtatg 26818516  T
Q  393 agatgtcatgatgtctctg 411  Q
    |||||| || |||||||||    
T  26818517 agatgtaatcatgtctctg 26818535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 26823928 - 26824065
Alignment:
Q  18 ttacttaaaagatatttaatgacaattctaattttaaaaagagttttttgcaactccaaaagcacttaaagctatttcattgattattattttttaagaa 117  Q
    |||||||||||||||||| ||||  |  || ||||||||| |||||||  ||||||||||||||||| ||||||||| ||||||| || |||||| | ||    
T  26823928 ttacttaaaagatatttactgaccgtggtagttttaaaaatagtttttcacaactccaaaagcactttaagctatttaattgatttttttttttttataa 26824027  T
Q  118 ttaaagctatttaattggtgtaaggagagtgttagttt 155  Q
    |||||||||||||| ||| |||||||||||||||||||    
T  26824028 ttaaagctatttaaatggcgtaaggagagtgttagttt 26824065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 26818112 - 26818248
Alignment:
Q  18 ttacttaaaagatatttaatgacaattctaattttaaaaagagttttttgcaactccaaaagcactt---aaagctatttcattgattattattttttaa 114  Q
    |||||||||||||||||||| |||| |||| |||||||||||| ||||   ||||||||||||||||    ||||||||| ||||||  || |||||| |    
T  26818112 ttacttaaaagatatttaataacaactctagttttaaaaagagcttttcagaactccaaaagcactttaataagctatttaattgat--tttttttttta 26818209  T
Q  115 gaattaaagctatttaattggtgtaaggagagtgttagt 153  Q
     |||||||||||||||||| | |||||||||||||||||    
T  26818210 taattaaagctatttaattagcgtaaggagagtgttagt 26818248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 207 - 398
Target Start/End: Complemental strand, 28419960 - 28419764
Alignment:
Q  207 aatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggtaagccacttt----tcaat 302  Q
    ||||||||| ||||| |||||| |||||||| ||||||||| ||||||| ||| |||||  ||| |||||||||| | |||||| || |||    | |      
T  28419960 aatatggctgaaattatcaagtatgtttatggtatgattatttttattttcctttttcttgtttcaacgaatgttcacggtaagtcaatttaattttatc 28419861  T
Q  303 cttcccaaattttcttctatactttgtaaacaatatttcatcctatct-agttatattctttttattctatttt-tcattacagcgggtattagatgt 398  Q
    |||  ||||||||||| | || |||||||||||||||  |||| || | ||||| |||||||| ||||| |||| | |||||||||||||||||||||    
T  28419860 cttttcaaattttcttttgtaatttgtaaacaatattatatcccattttagttacattctttt-attctcttttattattacagcgggtattagatgt 28419764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 206 - 247
Target Start/End: Complemental strand, 10926381 - 10926340
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattat 247  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  10926381 aaatatggctaaaattttcaagtttgtttatgttatgattat 10926340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 16910945 - 16911065
Alignment:
Q  177 tttgttacatgcaaagggctgaggtgtagaaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacga 276  Q
    |||| ||||||||||||| || || | |||||||||| | ||||| ||||||||  |||||||||||||||  |||||| | | |||||  ||| |||||    
T  16910945 tttggtacatgcaaaggg-tggggaggagaaatatggttgaaattgtcaagtttacttatgttatgattatccttatttccttatttcttttttcaacga 16911043  T
Q  277 atgttgatggtaagccactttt 298  Q
    | ||||| ||||||||| ||||    
T  16911044 acgttgacggtaagccaatttt 16911065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 23297688 - 23297808
Alignment:
Q  177 tttgttacatgcaaagggctgaggtgtagaaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacga 276  Q
    |||| ||||||||||||| || || | |||||||||| | ||||| ||||||||  ||| |||||||||||| |||||| | | |||||  ||| |||||    
T  23297688 tttggtacatgcaaaggg-tggggaggagaaatatggttgaaattgtcaagtttacttacgttatgattatacttatttccttatttcttttttcaacga 23297786  T
Q  277 atgttgatggtaagccactttt 298  Q
    | ||||| ||||||||| ||||    
T  23297787 acgttgacggtaagccaatttt 23297808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 298
Target Start/End: Original strand, 24197139 - 24197259
Alignment:
Q  177 tttgttacatgcaaagggctgaggtgtagaaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacga 276  Q
    |||| ||||||||||||| || || | |||||||||| | ||||| ||||||||  |||||||||||||||  |||||| | | |||||  ||| |||||    
T  24197139 tttggtacatgcaaaggg-tggggaggagaaatatggttgaaattgtcaagtttacttatgttatgattatccttatttccttatttcttttttcaacga 24197237  T
Q  277 atgttgatggtaagccactttt 298  Q
    | ||||| ||||||||| ||||    
T  24197238 acgttgacggtaagccaatttt 24197259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 206 - 253
Target Start/End: Complemental strand, 6091789 - 6091742
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatatttat 253  Q
    ||||||| || ||||| |||||||||||| ||||||||||||||||||    
T  6091789 aaatatgactgaaattctcaagtttgtttgtgttatgattatatttat 6091742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 247
Target Start/End: Complemental strand, 10938417 - 10938378
Alignment:
Q  208 atatggctcaaattttcaagtttgtttatgttatgattat 247  Q
    |||||||| ||||| |||||||||||||||||||||||||    
T  10938417 atatggctaaaattatcaagtttgtttatgttatgattat 10938378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 6080717 - 6080672
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatattt 251  Q
    ||||||| || ||||| |||||||||||| ||||||||||||||||    
T  6080717 aaatatgactgaaattctcaagtttgtttgtgttatgattatattt 6080672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 251
Target Start/End: Original strand, 6119858 - 6119903
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatattt 251  Q
    |||||||||| ||||| |||||||||||| | ||||||||||||||    
T  6119858 aaatatggctgaaattctcaagtttgtttgttttatgattatattt 6119903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 31279829 - 31279869
Alignment:
Q  207 aatatggctcaaattttcaagtttgtttatgttatgattat 247  Q
    ||||||||| ||||| |||||||||||||| ||||||||||    
T  31279829 aatatggctgaaattgtcaagtttgtttatcttatgattat 31279869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 355
Target Start/End: Original strand, 11860804 - 11860952
Alignment:
Q  207 aatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggtaagccacttttcaatcttc 306  Q
    ||||||||| ||||| ||||||||||||||||||||||||| ||| ||| ||  |||||  ||| || |||  |||| ||||||||| |||| |  |||     
T  11860804 aatatggctgaaattgtcaagtttgtttatgttatgattatctttgtttccccatttcttttttcaatgaaccttgacggtaagccattttttatccttt 11860903  T
Q  307 ccaaattttcttctatactttgtaaacaatatttcatcctatctagtta 355  Q
     ||||||||||||| ||||  |||||||||||| ||||| || ||||||    
T  11860904 tcaaattttcttctttactaagtaaacaatattccatcccatttagtta 11860952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 24944 - 24852
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatatttatttacctgtttctgattttaacgaatgttgatggtaagccactttt 298  Q
    |||||||| | ||||| | || ||| |||||||||||||||||||| ||| ||| |||||  || ||||||| ||||||||||||||| ||||    
T  24944 aaatatggttgaaattgttaaatttatttatgttatgattatatttttttccctatttcttgttgtaacgaaggttgatggtaagccattttt 24852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 27553958 - 27554003
Alignment:
Q  210 atggctcaaattttcaagtttgtttatgttatgattatatttattt 255  Q
    |||||||||||| ||||| ||||||||||||||||||| |||||||    
T  27553958 atggctcaaattgtcaagcttgtttatgttatgattatctttattt 27554003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 247
Target Start/End: Original strand, 24295200 - 24295241
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattat 247  Q
    ||||||||||  |||||||| |||||||||||||||||||||    
T  24295200 aaatatggctggaattttcatgtttgtttatgttatgattat 24295241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 24834358 - 24834308
Alignment:
Q  210 atggctcaaattttcaagtttgtttatgttatgattatatttatttacctg 260  Q
    |||||| |||||||||| |||||||||||||||||| ||||| ||| ||||    
T  24834358 atggctaaaattttcaactttgtttatgttatgattttatttctttccctg 24834308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 26315587 - 26315635
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatatttatt 254  Q
    |||||||||| |||||||  ||||||| |||| ||||||||||||||||    
T  26315587 aaatatggctaaaatttttgagtttgtgtatgctatgattatatttatt 26315635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 19199165 - 19199214
Alignment:
Q  206 aaatatggctcaaattttcaagtttgtttatgttatgattatatttattt 255  Q
    |||||||| | ||||| | ||||||||||||||||||||||| |||||||    
T  19199165 aaatatggttgaaattgttaagtttgtttatgttatgattatctttattt 19199214  T

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