View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_high_5 (Length: 373)

Name: NF12642_high_5
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_high_5
NF12642_high_5
[»] chr1 (6 HSPs)
chr1 (109-271)||(4015586-4015748)
chr1 (17-103)||(4015434-4015520)
chr1 (268-355)||(4015775-4015862)
chr1 (268-355)||(4017593-4017680)
chr1 (268-333)||(10218156-10218221)
chr1 (268-333)||(21897357-21897422)


Alignment Details
Target: chr1 (Bit Score: 151; Significance: 8e-80; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 109 - 271
Target Start/End: Original strand, 4015586 - 4015748
Alignment:
Q  109 gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4015586 gaaggaatggttttggaatacacgatgtatagggtgtctaacgatgctgaattcttccttatgttcaacgtgatatcccggaatacagattgtgttcttc 4015685  T
Q  209 gtgattattgttaagagcgaagggtttcgtgtctgtgatcgtgaattatggaggtgcaatttc 271  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4015686 gtgattatttttaagagcgaagagtttcgtgtctgtgatcgtgaattatgaaggtgcaatttc 4015748  T

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Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 4015434 - 4015520
Alignment:
Q  17 ttccaaacacagagccagtactcaaaaccataaacagttttagaaacaacttccaaaagaagcaatccattacaggaatcaactatc 103  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4015434 ttccaaacacagagccagtactcaaaaccataaacagtttcagaaacaacttccaaaagaagcaatccattacaggaatcaactatc 4015520  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 4015775 - 4015862
Alignment:
Q  268 tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctcaaagatgagttcgtcggggagg 355  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  4015775 tttccaagacttactcacacacctgaatcgaacaagagatctcactggaagaaatgaaagtacctcaaagatgagttcgtcggggagg 4015862  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 355
Target Start/End: Original strand, 4017593 - 4017680
Alignment:
Q  268 tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctcaaagatgagttcgtcggggagg 355  Q
    ||||||||| |||||||||||||| ||| ||| |||||||  ||| |||||||| ||||||||||| | |||||| || |||| ||||    
T  4017593 tttccaagatttactcacacacctaaattggagaagagatttcacgggaagaaacgaaagtacctcgacgatgagatcctcggagagg 4017680  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 333
Target Start/End: Complemental strand, 10218221 - 10218156
Alignment:
Q  268 tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctc 333  Q
    ||||||||| ||||||||||||||||| |  |||||||||  ||| |||||||| |||||||||||    
T  10218221 tttccaagatttactcacacacctgaagcaaacaagagatttcaccggaagaaaggaaagtacctc 10218156  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 333
Target Start/End: Original strand, 21897357 - 21897422
Alignment:
Q  268 tttccaagacttactcacacacctgaatcggacaagagatcccactggaagaaatgaaagtacctc 333  Q
    ||||||| ||||||| ||| |||||||||| | ||||||||  || |||||||| |||||||||||    
T  21897357 tttccaacacttacttacagacctgaatcgaataagagatctaacaggaagaaacgaaagtacctc 21897422  T

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