View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12642_low_1 (Length: 826)
Name: NF12642_low_1
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12642_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 371 - 811
Target Start/End: Original strand, 8172670 - 8173124
Alignment:
| Q |
371 |
tatatatatatcagcatagcaaggtaacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaa |
470 |
Q |
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| T |
8172670 |
tatatatatatcagcatagcaaggtaacataacaaagcgtggtggctgcaatcatattattatcttttgcaatggccgaaaaacaaaataacatgctgaa |
8172769 |
T |
|
| Q |
471 |
caagaactatggtgtgaatcaagatgatgcatctctagtgtcttgagtttatctcaaaagatttgcatcaaagacatattcgtaatgagttgtc---ttt |
567 |
Q |
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| T |
8172770 |
caagaactatggtgtgaatcaagatgatgcatctctagtgtct-gagtttatctcaaaagatttgcatcaaagacatattcgtaatgagtcgtcgtcttt |
8172868 |
T |
|
| Q |
568 |
atcagaagtgttgcaaaaggtatagcctat---------------ttattacgtcttcttaagaatgaaaaagtgttagatatacttgacaaaaaatgga |
652 |
Q |
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| T |
8172869 |
atcagaaat--tgcataaggtacagcctatattcgtttagccaatttattacgtcctcttaagaatgaaaaagtgttagatatacttgacaaaaaatgga |
8172966 |
T |
|
| Q |
653 |
actctgagggaatctatatagtgaatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacaca |
752 |
Q |
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| T |
8172967 |
actctgagggaatctatatagtgaatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacaca |
8173065 |
T |
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| Q |
753 |
atgatgttaattccttggctaagttggaagattatgaaaatcaattgtgtaatgaacat |
811 |
Q |
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| T |
8173066 |
atgatgttaattccttggctaagttggaagattatgttaatcaattgtgtaatgaacat |
8173124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 396 - 758
Target Start/End: Original strand, 7591014 - 7591389
Alignment:
| Q |
396 |
aacacaacaaagcgtggtggctgcaatcctattattatgttttgcaatggctgaaaaacaaaataacatgctgaacaagaactatggtgtgaatcaagat |
495 |
Q |
| |
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| T |
7591014 |
aacacaacaaagcgtggtggcttcaatcctattatc---tttagcaatggctgaaaaacaaaataacgtgctgaacaagaactatggtgtgaatcaagat |
7591110 |
T |
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| Q |
496 |
gatgcatctctagtgtcttgagtttatctcaaaagatttgcatcaaagacatattcgtaatgagttgtctttatcagaagtgttgcaaaaggtatagcct |
595 |
Q |
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| T |
7591111 |
gatgcatctctagtgt-gtgaattaatctctaatgatttgcatcaaagacatcttcgtaatgagtcttctttatcagaa--gttgcaaaaggtatagtct |
7591207 |
T |
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| Q |
596 |
---------------atttattacgtcttctt-aagaatgaaaaagtgttag----atatacttgacaaaaaatggaactctgagggaatctatatagtg |
675 |
Q |
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| T |
7591208 |
atattcgtttagctaatttattgcgtgttcttaaagaatgaataagtgttagatatatatacttgacaaaaaatggaactctgagggaatctatatagtg |
7591307 |
T |
|
| Q |
676 |
aatgatctacgtcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatg |
758 |
Q |
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| T |
7591308 |
aatgatctacgtcaattatcatttcaaggttcgtggcttgattcaatagaaaagttatttgctaataat-ctacataatgatg |
7591389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 157; E-Value: 5e-83
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 8169835 - 8170003
Alignment:
| Q |
1 |
gaaaaggatataaagaaagggaatggactgacaatgacaatgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttca |
100 |
Q |
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| T |
8169835 |
gaaaaggatataaagaaagggaatggactgacaatgacaatgggtatatgaattatcgaagaactattttcggagaagtggaaaatcatacttgttttca |
8169934 |
T |
|
| Q |
101 |
tttagaagttggatcgatgacatatctgatgggtttcagccaagaagattgtagagggagaacgttttt |
169 |
Q |
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| T |
8169935 |
gttagaagttggatcggtgacatatctgatgggtttcagccaagaagattgtagagggagaactttttt |
8170003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 590 - 811
Target Start/End: Complemental strand, 8225690 - 8225467
Alignment:
| Q |
590 |
tagcctatttattacgtcttcttaagaatgaaaaagtgttagatata---cttgacaaaaaatggaactctgagggaatctatatagtgaatgatctacg |
686 |
Q |
| |
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| T |
8225690 |
tagccgatttattacgtctgattaaggatgaaaaggtgttagatataatacttgacaaaaaaaggaattctgaggtaaagtatatggtgaatgatctacg |
8225591 |
T |
|
| Q |
687 |
tcaattatcttttgaaggttcgtggcttgattcaatagaaaaattatttgttaataatcctacacaatgatgttaattccttggctaagttggaagatta |
786 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||| |||| ||||||||||||| | |
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| T |
8225590 |
tcaattttcttttcaaggttcgtggcttgattcaatagaaaaattatttgttaataat-ctacacgatgatgttagttctttggttaagttggaagatca |
8225492 |
T |
|
| Q |
787 |
tgaaaatcaattgtgtaatgaacat |
811 |
Q |
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|||||||||| ||||||| |||||| |
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| T |
8225491 |
tgaaaatcaactgtgtaaggaacat |
8225467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 167 - 252
Target Start/End: Original strand, 8172461 - 8172544
Alignment:
| Q |
167 |
tttatattcccgtcaatatttctatgtacaannnnnnnnnngttgtaggttttagaacctagaaaag-tattaatatattagatttt |
252 |
Q |
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| T |
8172461 |
tttatattcccgtcaatatttctatgtacaatttttttt---ttgtaggttttagaacctagaaaagttattaatatattagttttt |
8172544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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