View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_low_11 (Length: 307)

Name: NF12642_low_11
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_low_11
NF12642_low_11
[»] chr8 (16 HSPs)
chr8 (128-288)||(37771603-37771764)
chr8 (130-288)||(25368035-25368193)
chr8 (130-288)||(34818741-34818900)
chr8 (130-243)||(8331408-8331522)
chr8 (231-265)||(17025930-17025964)
chr8 (231-265)||(17556422-17556456)
chr8 (231-265)||(24090622-24090656)
chr8 (231-265)||(31449932-31449966)
chr8 (231-265)||(34118461-34118495)
chr8 (228-262)||(38182306-38182340)
chr8 (231-265)||(40130752-40130786)
chr8 (232-265)||(19430011-19430044)
chr8 (232-265)||(19435513-19435546)
chr8 (232-265)||(19566160-19566193)
chr8 (232-265)||(19571662-19571695)
chr8 (232-265)||(31030525-31030558)
[»] chr2 (13 HSPs)
chr2 (129-288)||(6297928-6298088)
chr2 (20-130)||(36287534-36287644)
chr2 (140-279)||(19538290-19538429)
chr2 (170-215)||(11658979-11659024)
chr2 (231-265)||(1935059-1935093)
chr2 (231-265)||(9180790-9180824)
chr2 (231-265)||(10160790-10160824)
chr2 (230-280)||(11658939-11658989)
chr2 (231-265)||(19892532-19892566)
chr2 (231-265)||(25497391-25497425)
chr2 (231-265)||(31326734-31326768)
chr2 (235-265)||(40518537-40518567)
chr2 (233-265)||(30658260-30658292)
[»] chr5 (27 HSPs)
chr5 (129-281)||(13301535-13301688)
chr5 (137-288)||(31731444-31731596)
chr5 (130-288)||(21324008-21324167)
chr5 (137-203)||(36949039-36949104)
chr5 (162-207)||(23977425-23977470)
chr5 (231-266)||(37248860-37248895)
chr5 (231-265)||(556690-556724)
chr5 (231-265)||(561462-561496)
chr5 (231-265)||(7451753-7451787)
chr5 (235-265)||(17510058-17510088)
chr5 (231-265)||(26667267-26667301)
chr5 (235-265)||(26709102-26709132)
chr5 (231-265)||(26938864-26938898)
chr5 (235-265)||(26978836-26978866)
chr5 (231-265)||(29168039-29168073)
chr5 (235-265)||(36253826-36253856)
chr5 (231-265)||(36428704-36428738)
chr5 (231-265)||(36937577-36937611)
chr5 (231-265)||(36942331-36942365)
chr5 (231-265)||(39518405-39518439)
chr5 (231-265)||(39523044-39523078)
chr5 (235-265)||(41853548-41853578)
chr5 (231-265)||(42001429-42001463)
chr5 (235-265)||(42019573-42019603)
chr5 (232-265)||(14374132-14374165)
chr5 (235-264)||(24771423-24771452)
chr5 (233-265)||(32461615-32461647)
[»] chr7 (23 HSPs)
chr7 (130-288)||(27256136-27256295)
chr7 (129-280)||(40865403-40865555)
chr7 (136-215)||(19640180-19640258)
chr7 (232-265)||(9973459-9973492)
chr7 (235-284)||(12934397-12934446)
chr7 (231-266)||(26341194-26341229)
chr7 (235-282)||(43892858-43892905)
chr7 (231-265)||(3357698-3357732)
chr7 (231-265)||(4579503-4579537)
chr7 (231-265)||(4930228-4930262)
chr7 (231-265)||(9651033-9651067)
chr7 (231-265)||(10388431-10388465)
chr7 (235-265)||(16539477-16539507)
chr7 (235-265)||(16626155-16626185)
chr7 (235-265)||(21081106-21081136)
chr7 (231-265)||(27238237-27238271)
chr7 (235-265)||(32212719-32212749)
chr7 (235-265)||(42571945-42571975)
chr7 (235-265)||(47177184-47177214)
chr7 (181-214)||(7875189-7875222)
chr7 (232-265)||(8076046-8076079)
chr7 (232-265)||(24528351-24528384)
chr7 (233-265)||(23866065-23866097)
[»] chr1 (22 HSPs)
chr1 (124-288)||(41097994-41098159)
chr1 (139-265)||(8267896-8268023)
chr1 (139-281)||(33054941-33055084)
chr1 (148-264)||(33054478-33054595)
chr1 (231-265)||(3094109-3094143)
chr1 (235-265)||(3584601-3584631)
chr1 (235-265)||(5724979-5725009)
chr1 (235-265)||(5730105-5730135)
chr1 (231-265)||(10135451-10135485)
chr1 (235-265)||(11251178-11251208)
chr1 (231-265)||(23192883-23192917)
chr1 (231-265)||(25855166-25855200)
chr1 (235-265)||(27716443-27716473)
chr1 (235-265)||(37404481-37404511)
chr1 (235-265)||(37409602-37409632)
chr1 (231-265)||(47451291-47451325)
chr1 (231-265)||(47455452-47455486)
chr1 (232-265)||(10106100-10106133)
chr1 (232-265)||(13890810-13890843)
chr1 (130-171)||(17536684-17536725)
chr1 (232-265)||(38734272-38734305)
chr1 (233-265)||(16649678-16649710)
[»] scaffold0061 (1 HSPs)
scaffold0061 (130-288)||(45678-45837)
[»] scaffold0017 (1 HSPs)
scaffold0017 (130-288)||(152950-153109)
[»] chr4 (27 HSPs)
chr4 (126-288)||(34560387-34560550)
chr4 (130-251)||(7903177-7903299)
chr4 (136-288)||(41816686-41816837)
chr4 (167-253)||(31298469-31298553)
chr4 (232-288)||(3998099-3998155)
chr4 (231-265)||(37259943-37259977)
chr4 (231-265)||(5271485-5271519)
chr4 (230-264)||(5928286-5928320)
chr4 (231-265)||(8693706-8693740)
chr4 (235-265)||(8980350-8980380)
chr4 (235-265)||(8985470-8985500)
chr4 (231-265)||(13522058-13522092)
chr4 (235-265)||(13700510-13700540)
chr4 (235-265)||(21299898-21299928)
chr4 (235-265)||(21305018-21305048)
chr4 (231-265)||(31269029-31269063)
chr4 (231-265)||(31273516-31273550)
chr4 (231-265)||(32221163-32221197)
chr4 (231-265)||(33463422-33463456)
chr4 (231-265)||(37264630-37264664)
chr4 (235-265)||(41393245-41393275)
chr4 (235-265)||(51019438-51019468)
chr4 (235-265)||(53797629-53797659)
chr4 (235-265)||(54991486-54991516)
chr4 (235-264)||(13695159-13695188)
chr4 (232-265)||(39319628-39319661)
chr4 (231-264)||(42758822-42758855)
[»] chr3 (27 HSPs)
chr3 (131-288)||(31002592-31002749)
chr3 (130-288)||(10586225-10586384)
chr3 (154-288)||(45904947-45905082)
chr3 (154-288)||(45904491-45904626)
chr3 (139-200)||(795511-795572)
chr3 (230-281)||(27605185-27605236)
chr3 (235-266)||(54270644-54270675)
chr3 (231-265)||(3033637-3033671)
chr3 (235-265)||(3477011-3477041)
chr3 (235-265)||(3482488-3482518)
chr3 (231-265)||(3672579-3672613)
chr3 (231-265)||(3692611-3692645)
chr3 (231-265)||(7571284-7571318)
chr3 (231-265)||(8069673-8069707)
chr3 (231-265)||(8887923-8887957)
chr3 (235-265)||(17364063-17364093)
chr3 (235-265)||(17368719-17368749)
chr3 (231-265)||(18467218-18467252)
chr3 (231-265)||(23666189-23666223)
chr3 (231-265)||(24038437-24038471)
chr3 (231-265)||(29350233-29350267)
chr3 (235-265)||(34129234-34129264)
chr3 (231-265)||(39775794-39775828)
chr3 (232-265)||(33089408-33089441)
chr3 (232-265)||(53358239-53358272)
chr3 (237-265)||(1688952-1688980)
chr3 (237-265)||(10321444-10321472)
[»] scaffold0041 (1 HSPs)
scaffold0041 (130-279)||(35706-35856)
[»] scaffold0020 (1 HSPs)
scaffold0020 (134-288)||(1268-1423)
[»] scaffold0060 (3 HSPs)
scaffold0060 (136-281)||(47906-48052)
scaffold0060 (137-281)||(52949-53094)
scaffold0060 (235-265)||(37010-37040)
[»] chr6 (15 HSPs)
chr6 (129-267)||(12662671-12662811)
chr6 (142-288)||(6113015-6113162)
chr6 (230-265)||(5601038-5601073)
chr6 (230-265)||(12183066-12183101)
chr6 (235-265)||(6728400-6728430)
chr6 (231-265)||(8747777-8747811)
chr6 (235-265)||(21396699-21396729)
chr6 (235-265)||(21401755-21401785)
chr6 (235-265)||(24191448-24191478)
chr6 (235-265)||(24192545-24192575)
chr6 (235-265)||(31981560-31981590)
chr6 (235-265)||(34142080-34142110)
chr6 (235-265)||(34154696-34154726)
chr6 (232-265)||(3901909-3901942)
chr6 (232-265)||(19478145-19478178)
[»] scaffold0070 (1 HSPs)
scaffold0070 (130-207)||(62930-63007)
[»] scaffold0002 (1 HSPs)
scaffold0002 (231-266)||(4069-4104)
[»] scaffold0594 (1 HSPs)
scaffold0594 (235-265)||(9273-9303)
[»] scaffold0517 (1 HSPs)
scaffold0517 (235-265)||(3563-3593)
[»] scaffold0352 (1 HSPs)
scaffold0352 (231-265)||(7099-7133)
[»] scaffold0182 (1 HSPs)
scaffold0182 (231-265)||(9953-9987)
[»] scaffold0166 (1 HSPs)
scaffold0166 (235-265)||(13805-13835)
[»] scaffold0045 (1 HSPs)
scaffold0045 (231-265)||(83061-83095)
[»] scaffold0014 (1 HSPs)
scaffold0014 (235-265)||(31545-31575)
[»] scaffold0067 (1 HSPs)
scaffold0067 (232-265)||(34034-34067)
[»] scaffold0027 (1 HSPs)
scaffold0027 (138-203)||(43027-43091)


Alignment Details
Target: chr8 (Bit Score: 138; Significance: 4e-72; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 128 - 288
Target Start/End: Original strand, 37771603 - 37771764
Alignment:
Q  128 tctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcc 227  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37771603 tctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcc 37771702  T
Q  228 tac-aggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |||  ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  37771703 tactgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 37771764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 25368193 - 25368035
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25368193 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccattttgagtcttcttgaagtccta 25368094  T
Q  230 caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    | |||||||||||||||||||| |||| |||||||||||||||  ||||||| ||||||    
T  25368093 cgggttgagtcacgaccaggtcactttttttaagacaaatcacgacactacccgaaatt 25368035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 34818900 - 34818741
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||| |||| |||||||||||||| ||||||||||||||||||||||    
T  34818900 tgttgtaaattgttgttttttgggttcagaagcgtacctttttaataaagtcaaaattaccatcgaagatattaccaagttgagtcttcttgaagtccta 34818801  T
Q  230 c-aggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |  |||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||    
T  34818800 ctgggttgagtcacgaccaggtcgctttctttaagacaaatcacgacactacccgaaatt 34818741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 130 - 243
Target Start/End: Complemental strand, 8331522 - 8331408
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8331522 tgttgtaaattgttgtttttcgggttcagaagcatacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 8331423  T
Q  230 -caggttgagtcacg 243  Q
     | ||||||||||||    
T  8331422 ccgggttgagtcacg 8331408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 17025930 - 17025964
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  17025930 aggttgagtcacgaccaggtcgctctctttaagac 17025964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 17556422 - 17556456
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  17556422 aggttgagtcacgaccaggtcgctctctttaagac 17556456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 24090622 - 24090656
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  24090622 aggttgagtcacgaccaggtcgctctctttaagac 24090656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 31449966 - 31449932
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  31449966 aggttgagtcacgaccaggtcgctctctttaagac 31449932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 34118461 - 34118495
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  34118461 aggttgagtcacgaccaggtcgctctctttaagac 34118495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 228 - 262
Target Start/End: Complemental strand, 38182340 - 38182306
Alignment:
Q  228 tacaggttgagtcacgaccaggtcgctttctttaa 262  Q
    ||||||||||||||||||||||||||| |||||||    
T  38182340 tacaggttgagtcacgaccaggtcgctctctttaa 38182306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 40130786 - 40130752
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  40130786 aggttgagtcacgaccaggtcgctctctttaagac 40130752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 19430011 - 19430044
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  19430011 ggttgagtcacgaccaggtcgctctctttaagac 19430044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 19435513 - 19435546
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  19435513 ggttgagtcacgaccaggtcgctctctttaagac 19435546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 19566160 - 19566193
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  19566160 ggttgagtcacgaccaggtcgctctctttaagac 19566193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 19571662 - 19571695
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  19571662 ggttgagtcacgaccaggtcgctctctttaagac 19571695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 31030525 - 31030558
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  31030525 ggttgagtcacgaccaggtcgctctctttaagac 31030558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 137; Significance: 1e-71; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 129 - 288
Target Start/End: Complemental strand, 6298088 - 6297928
Alignment:
Q  129 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6298088 ctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 6297989  T
Q  229 a-caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    | | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  6297988 accgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 6297928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 20 - 130
Target Start/End: Complemental strand, 36287644 - 36287534
Alignment:
Q  20 acccttatgaaaattgtgaaaacagtcatgtctgataataaccccaccattgtagactttcgaaaccagctgcacgaatgtgtgacaatcataataaatt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36287644 acccttatgaaaattgtgaaaacagtcatgtctgataataaccccaccattgtagactttcgaaaccagctgcacgaatgtgtgacaatcataataaatt 36287545  T
Q  120 cttaagtttct 130  Q
    |||||||||||    
T  36287544 cttaagtttct 36287534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 279
Target Start/End: Original strand, 19538290 - 19538429
Alignment:
Q  140 tgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggttgag 238  Q
    ||||||||||   |||||||| |||||||||| |||||| || |||||||||||||||||||||||| ||||||||| ||||| |||||| | |||||||    
T  19538290 tgttgttttttgagttcagaaacgtacctttt-aataaaatctaaatcaccaccgaagatattaccaggttgagtctgcttgacgtcctaccgggttgag 19538388  T
Q  239 tcacgaccaggtcgctttctttaagacaaatcacagcacta 279  Q
    ||||||||||||||||||||||||||||  |||| ||||||    
T  19538389 tcacgaccaggtcgctttctttaagacatttcacggcacta 19538429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 215
Target Start/End: Complemental strand, 11659024 - 11658979
Alignment:
Q  170 tttaataaagtcgaaatcaccaccgaagatattaccatgttgagtc 215  Q
    ||||||||| |||||||||||||||||||||||| || ||||||||    
T  11659024 tttaataaaatcgaaatcaccaccgaagatattatcaggttgagtc 11658979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 1935093 - 1935059
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  1935093 aggttgagtcacgaccaggtcgctctctttaagac 1935059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 9180824 - 9180790
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  9180824 aggttgagtcacgaccaggtcgctctctttaagac 9180790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 10160824 - 10160790
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  10160824 aggttgagtcacgaccaggtcgctctctttaagac 10160790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 280
Target Start/End: Complemental strand, 11658989 - 11658939
Alignment:
Q  230 caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactac 280  Q
    |||||||||||| ||||| ||||||||||||||||||  |||| |||||||    
T  11658989 caggttgagtcatgaccaagtcgctttctttaagacatttcacggcactac 11658939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 19892566 - 19892532
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  19892566 aggttgagtcacgaccaggtcgctctctttaagac 19892532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 25497425 - 25497391
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  25497425 aggttgagtcacgaccaggtcgctctctttaagac 25497391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 31326734 - 31326768
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  31326734 aggttgagtcacgaccaggtcgctctctttaagac 31326768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 40518567 - 40518537
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  40518567 tgagtcacgaccaggtcgctttctttaagac 40518537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 30658260 - 30658292
Alignment:
Q  233 gttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||| ||||||||||    
T  30658260 gttgagtcacgaccaggtcgctctctttaagac 30658292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 134; Significance: 9e-70; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 129 - 281
Target Start/End: Complemental strand, 13301688 - 13301535
Alignment:
Q  129 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 228  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  13301688 ctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcaaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 13301589  T
Q  229 a-caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacc 281  Q
    | ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  13301588 accaggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacc 13301535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 137 - 288
Target Start/End: Original strand, 31731444 - 31731596
Alignment:
Q  137 aattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggtt 235  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  31731444 aattgttgtttttcgggttcaaaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctaccgggtt 31731543  T
Q  236 gagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    ||||||||||||||||||||||||||||||||||||  |||||||| ||||||    
T  31731544 gagtcacgaccaggtcgctttctttaagacaaatcagggcactacccgaaatt 31731596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 21324167 - 21324008
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    |||||||||||||| |||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||    
T  21324167 tgttgtaaattgttatttttcgggttcagaagcatacttttttaaaaaagtcgaaatcaccaccgaagatattaccacgttgagtcttcttaaagtccta 21324068  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
     | |||||||||| |||||||||||||||||||||||||||||| |||||| | ||||||    
T  21324067 ccgggttgagtcatgaccaggtcgctttctttaagacaaatcacggcactatccgaaatt 21324008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 203
Target Start/End: Original strand, 36949039 - 36949104
Alignment:
Q  137 aattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatatta 203  Q
    ||||||||||||||| ||||||||  |||| ||||||||||| ||||||||||||||||||||||||    
T  36949039 aattgttgtttttcaagttcagaaaagtac-tttttaataaaatcgaaatcaccaccgaagatatta 36949104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 207
Target Start/End: Complemental strand, 23977470 - 23977425
Alignment:
Q  162 cgtacctttttaataaagtcgaaatcaccaccgaagatattaccat 207  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||||    
T  23977470 cgtacttttttaataaaatcgaaatcaccaccgaagatattaccat 23977425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 266
Target Start/End: Complemental strand, 37248895 - 37248860
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagaca 266  Q
    |||||||||||||||||||||||| |||||||||||    
T  37248895 aggttgagtcacgaccaggtcgctctctttaagaca 37248860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 556690 - 556724
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  556690 aggttgagtcacgaccaggtcgctctctttaagac 556724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 561462 - 561496
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  561462 aggttgagtcacgaccaggtcgctctctttaagac 561496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 7451753 - 7451787
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  7451753 aggttgagtcacgaccaggtcgctctctttaagac 7451787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 17510058 - 17510088
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  17510058 tgagtcacgaccaggtcgctttctttaagac 17510088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 26667267 - 26667301
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  26667267 aggttgagtcacgaccaggtcgctctctttaagac 26667301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 26709102 - 26709132
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  26709102 tgagtcacgaccaggtcgctttctttaagac 26709132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 26938864 - 26938898
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  26938864 aggttgagtcacgaccaggtcgctctctttaagac 26938898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 26978836 - 26978866
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  26978836 tgagtcacgaccaggtcgctttctttaagac 26978866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 29168073 - 29168039
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  29168073 aggttgagtcacgaccaggtcgctctctttaagac 29168039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 36253826 - 36253856
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  36253826 tgagtcacgaccaggtcgctttctttaagac 36253856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 36428704 - 36428738
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  36428704 aggttgagtcacgaccaggtcgctctctttaagac 36428738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 36937611 - 36937577
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  36937611 aggttgagtcacgaccaggtcgctctctttaagac 36937577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 36942365 - 36942331
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  36942365 aggttgagtcacgaccaggtcgctctctttaagac 36942331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 39518405 - 39518439
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  39518405 aggttgagtcacgaccaggtcgctctctttaagac 39518439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 39523044 - 39523078
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  39523044 aggttgagtcacgaccaggtcgctctctttaagac 39523078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 41853548 - 41853578
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  41853548 tgagtcacgaccaggtcgctttctttaagac 41853578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 42001429 - 42001463
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  42001429 aggttgagtcacgaccaggtcgctctctttaagac 42001463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 42019573 - 42019603
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  42019573 tgagtcacgaccaggtcgctttctttaagac 42019603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 14374132 - 14374165
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  14374132 ggttgagtcacgaccaggtcgctctctttaagac 14374165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 24771452 - 24771423
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaaga 264  Q
    ||||||||||||||||||||||||||||||    
T  24771452 tgagtcacgaccaggtcgctttctttaaga 24771423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 32461647 - 32461615
Alignment:
Q  233 gttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||| ||||||||||    
T  32461647 gttgagtcacgaccaggtcgctctctttaagac 32461615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 3e-66; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 27256136 - 27256295
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  27256136 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagttcta 27256235  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
     | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  27256236 ccgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 27256295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 129 - 280
Target Start/End: Complemental strand, 40865555 - 40865403
Alignment:
Q  129 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 228  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40865555 ctgttgtaaattgttgtttttcgggttcagaagagtacctatttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcct 40865456  T
Q  229 a-caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactac 280  Q
    | | ||||||||||| ||||||| ||||||||||||| ||||||| |||||||    
T  40865455 accgggttgagtcacaaccaggttgctttctttaagataaatcacggcactac 40865403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 215
Target Start/End: Original strand, 19640180 - 19640258
Alignment:
Q  136 aaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtc 215  Q
    |||||||||||||||  ||||  ||  ||||||||| |||||| ||||||||||||||||||||||||||  ||||||||    
T  19640180 aaattgttgtttttcgagttctaaaaagtacctttt-aataaaatcgaaatcaccaccgaagatattaccgggttgagtc 19640258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 9973459 - 9973492
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||||||||||||||    
T  9973459 ggttgagtcacgaccaggtcgctttctttaagac 9973492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 12934397 - 12934446
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctga 284  Q
    ||||||||||||||||||||||||||||||||  || | |||||||||||    
T  12934397 tgagtcacgaccaggtcgctttctttaagacatttcgcggcactacctga 12934446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 26341194 - 26341229
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagaca 266  Q
    |||||||||||||||||||||||| |||||||||||    
T  26341194 aggttgagtcacgaccaggtcgctctctttaagaca 26341229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 282
Target Start/End: Original strand, 43892858 - 43892905
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagacaaatcacagcactacct 282  Q
    |||||||||||||||||||||||||||||||   |||| |||||||||    
T  43892858 tgagtcacgaccaggtcgctttctttaagacgtttcacggcactacct 43892905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 3357732 - 3357698
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  3357732 aggttgagtcacgaccaggtcgctctctttaagac 3357698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 4579503 - 4579537
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  4579503 aggttgagtcacgaccaggtcgctctctttaagac 4579537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 4930228 - 4930262
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  4930228 aggttgagtcacgaccaggtcgctctctttaagac 4930262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 9651067 - 9651033
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  9651067 aggttgagtcacgaccaggtcgctctctttaagac 9651033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 10388465 - 10388431
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  10388465 aggttgagtcacgaccaggtcgctctctttaagac 10388431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 16539507 - 16539477
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  16539507 tgagtcacgaccaggtcgctttctttaagac 16539477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 16626155 - 16626185
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  16626155 tgagtcacgaccaggtcgctttctttaagac 16626185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 21081136 - 21081106
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  21081136 tgagtcacgaccaggtcgctttctttaagac 21081106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 27238237 - 27238271
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  27238237 aggttgagtcacgaccaggtcgctctctttaagac 27238271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 32212749 - 32212719
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  32212749 tgagtcacgaccaggtcgctttctttaagac 32212719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 42571945 - 42571975
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  42571945 tgagtcacgaccaggtcgctttctttaagac 42571975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 47177214 - 47177184
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  47177214 tgagtcacgaccaggtcgctttctttaagac 47177184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 214
Target Start/End: Complemental strand, 7875222 - 7875189
Alignment:
Q  181 cgaaatcaccaccgaagatattaccatgttgagt 214  Q
    |||||||||||||||||||||||||| |||||||    
T  7875222 cgaaatcaccaccgaagatattaccaggttgagt 7875189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 8076046 - 8076079
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  8076046 ggttgagtcacgaccaggtcgctctctttaagac 8076079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 24528351 - 24528384
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  24528351 ggttgagtcacgaccaggtcgctctctttaagac 24528384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 23866065 - 23866097
Alignment:
Q  233 gttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||| ||||||||||    
T  23866065 gttgagtcacgaccaggtcgctctctttaagac 23866097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 124 - 288
Target Start/End: Complemental strand, 41098159 - 41097994
Alignment:
Q  124 agtttctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaa 223  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  41098159 agtttttgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaatcaacaccgaagatattaccatgttaagtcttcttgaa 41098060  T
Q  224 gtccta-caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    || ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  41098059 gttctaccgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 41097994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 139 - 265
Target Start/End: Complemental strand, 8268023 - 8267896
Alignment:
Q  139 ttgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggttga 237  Q
    |||||||||| | ||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||    
T  8268023 ttgttgttttacgggttcagaaacgtacctttttaataaaatcgaaatcaccatcgaagatattaccatgttgagtcttcttgaagtcctatcgggttga 8267924  T
Q  238 gtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||||||||    
T  8267923 gtcacgaccaggtcgctttctttaagac 8267896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 33054941 - 33055084
Alignment:
Q  139 ttgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggttga 237  Q
    |||||||||||| |||||||||  |||||||||||||||| | |||||||| | ||||||||||||||||||||||||||||||| || || ||||||||    
T  33054941 ttgttgtttttcgggttcagaaatgtacctttttaataaaattgaaatcactatcgaagatattaccatgttgagtcttcttgaaatcgtaccaggttga 33055040  T
Q  238 gtcacgaccaggtcgctttctttaagacaaatcacagcactacc 281  Q
    ||||| |||| ||||||||||||||||| |||||| ||||||||    
T  33055041 gtcacaaccatgtcgctttctttaagactaatcacggcactacc 33055084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 33054595 - 33054478
Alignment:
Q  148 ttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggttgagtcacgacc 246  Q
    |||| |||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| || |    
T  33054595 ttcatgttcagaaacgtaactttttaataaaatcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctaccgggttgagtcatgaac 33054496  T
Q  247 aggtcgctttctttaaga 264  Q
    | ||||||||||||||||    
T  33054495 atgtcgctttctttaaga 33054478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 3094109 - 3094143
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  3094109 aggttgagtcacgaccaggtcgctctctttaagac 3094143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 3584601 - 3584631
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  3584601 tgagtcacgaccaggtcgctttctttaagac 3584631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 5724979 - 5725009
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  5724979 tgagtcacgaccaggtcgctttctttaagac 5725009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 5730105 - 5730135
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  5730105 tgagtcacgaccaggtcgctttctttaagac 5730135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 10135451 - 10135485
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  10135451 aggttgagtcacgaccaggtcgctctctttaagac 10135485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 11251208 - 11251178
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  11251208 tgagtcacgaccaggtcgctttctttaagac 11251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 23192917 - 23192883
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  23192917 aggttgagtcacgaccaggtcgctctctttaagac 23192883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 25855166 - 25855200
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  25855166 aggttgagtcacgaccaggtcgctctctttaagac 25855200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 27716443 - 27716473
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  27716443 tgagtcacgaccaggtcgctttctttaagac 27716473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 37404511 - 37404481
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  37404511 tgagtcacgaccaggtcgctttctttaagac 37404481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 37409632 - 37409602
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  37409632 tgagtcacgaccaggtcgctttctttaagac 37409602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 47451325 - 47451291
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  47451325 aggttgagtcacgaccaggtcgctctctttaagac 47451291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 47455486 - 47455452
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  47455486 aggttgagtcacgaccaggtcgctctctttaagac 47455452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 10106100 - 10106133
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  10106100 ggttgagtcacgaccaggtcgctctctttaagac 10106133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 13890810 - 13890843
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  13890810 ggttgagtcacgaccaggtcgctctctttaagac 13890843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 17536725 - 17536684
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttt 171  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  17536725 tgttgtaaattgttgtttttcgagttcagaaacgtacctttt 17536684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 38734272 - 38734305
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  38734272 ggttgagtcacgaccaggtcgctctctttaagac 38734305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 16649710 - 16649678
Alignment:
Q  233 gttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||| ||||||||||    
T  16649710 gttgagtcacgaccaggtcgctctctttaagac 16649678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 130 - 288
Target Start/End: Original strand, 45678 - 45837
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45678 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagttgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 45777  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
     | ||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||    
T  45778 ccgggttgagtcacaaccaggtcgctttctttaaaacaaatcacggcactacccgaaatt 45837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 153109 - 152950
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  153109 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagttgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 153010  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
     | ||||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||||    
T  153009 ccgggttgagtcacaaccaggtcgctttctttaaaacaaatcacggcactacccgaaatt 152950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 126 - 288
Target Start/End: Original strand, 34560387 - 34560550
Alignment:
Q  126 tttctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagt 225  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||    
T  34560387 tttctgttgtaaattgtcgtttttcgggttcagaaacgtacctttttaataaagttgaaatcaccaccgaagatattatcatgttgagtcttcttgaagt 34560486  T
Q  226 ccta-caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |||| | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  34560487 cctaccgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 34560550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 130 - 251
Target Start/End: Complemental strand, 7903299 - 7903177
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7903299 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaatcaccaccaaagatattaccatgttgagtcttcttgaagtccta 7903200  T
Q  230 -caggttgagtcacgaccaggtc 251  Q
     | ||||||||||||||||||||    
T  7903199 ccgggttgagtcacgaccaggtc 7903177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 288
Target Start/End: Original strand, 41816686 - 41816837
Alignment:
Q  136 aaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggt 234  Q
    |||||||||| |||||  ||||||| |  |||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  41816686 aaattgttgtatttcatattcagaaac--acctttttgataaaatcaaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctaccgggt 41816783  T
Q  235 tgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |||||||||| ||||| ||||||||||||||||| ||| |||||||| ||||||    
T  41816784 tgagtcacgatcaggttgctttctttaagacaaaccacggcactacccgaaatt 41816837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 253
Target Start/End: Complemental strand, 31298553 - 31298469
Alignment:
Q  167 ctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctacaggttgagtcacgaccaggtcgc 253  Q
    |||||||||||| ||||||||| ||  |||| ||||||||||||||||||||||||||| |  |||||||||||||| |||||||||    
T  31298553 ctttttaataaaatcgaaatcatcattgaaggtattaccatgttgagtcttcttgaagtac--caggttgagtcacggccaggtcgc 31298469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 232 - 288
Target Start/End: Complemental strand, 3998155 - 3998099
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  3998155 ggttgagtcacgaccaggtcgctttctttaagataaatcacggcactacccgaaatt 3998099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 37259977 - 37259943
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||||||    
T  37259977 aggttgagtcacgaccaggtcgctttctttaagac 37259943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 5271519 - 5271485
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  5271519 aggttgagtcacgaccaggtcgctctctttaagac 5271485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 5928320 - 5928286
Alignment:
Q  230 caggttgagtcacgaccaggtcgctttctttaaga 264  Q
    ||||||||||||||||||||||||| |||||||||    
T  5928320 caggttgagtcacgaccaggtcgctctctttaaga 5928286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 8693706 - 8693740
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  8693706 aggttgagtcacgaccaggtcgctctctttaagac 8693740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 8980380 - 8980350
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  8980380 tgagtcacgaccaggtcgctttctttaagac 8980350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 8985500 - 8985470
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  8985500 tgagtcacgaccaggtcgctttctttaagac 8985470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 13522092 - 13522058
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  13522092 aggttgagtcacgaccaggtcgctctctttaagac 13522058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 13700510 - 13700540
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  13700510 tgagtcacgaccaggtcgctttctttaagac 13700540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 21299928 - 21299898
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  21299928 tgagtcacgaccaggtcgctttctttaagac 21299898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 21305048 - 21305018
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  21305048 tgagtcacgaccaggtcgctttctttaagac 21305018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 31269029 - 31269063
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  31269029 aggttgagtcacgaccaggtcgctctctttaagac 31269063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 31273516 - 31273550
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  31273516 aggttgagtcacgaccaggtcgctctctttaagac 31273550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 32221197 - 32221163
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  32221197 aggttgagtcacgaccaggtcgctctctttaagac 32221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 33463456 - 33463422
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  33463456 aggttgagtcacgaccaggtcgctctctttaagac 33463422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 37264664 - 37264630
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  37264664 aggttgagtcacgaccaggtcgctctctttaagac 37264630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 41393245 - 41393275
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  41393245 tgagtcacgaccaggtcgctttctttaagac 41393275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 51019468 - 51019438
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  51019468 tgagtcacgaccaggtcgctttctttaagac 51019438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 53797629 - 53797659
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  53797629 tgagtcacgaccaggtcgctttctttaagac 53797659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 54991486 - 54991516
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  54991486 tgagtcacgaccaggtcgctttctttaagac 54991516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 13695159 - 13695188
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaaga 264  Q
    ||||||||||||||||||||||||||||||    
T  13695159 tgagtcacgaccaggtcgctttctttaaga 13695188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 39319628 - 39319661
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||| ||||||||||||||||||||    
T  39319628 ggttgagtcacgatcaggtcgctttctttaagac 39319661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 42758855 - 42758822
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaaga 264  Q
    |||||||||||||||||||||||| |||||||||    
T  42758855 aggttgagtcacgaccaggtcgctctctttaaga 42758822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 131 - 288
Target Start/End: Original strand, 31002592 - 31002749
Alignment:
Q  131 gttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta- 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||     
T  31002592 gttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccacctaagatatcaccatgttgagtcttcttgaagtcctac 31002691  T
Q  230 caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    | ||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||    
T  31002692 cgggttgagtcacga-caggtcgctttctttaagacaaatcacggcactacccgaaatt 31002749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 130 - 288
Target Start/End: Complemental strand, 10586384 - 10586225
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    |||||| |||||||||||||| |||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10586384 tgttgttaattgttgtttttcgggtttagaagcgaacatttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 10586285  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
     | ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  10586284 ccgggttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 10586225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 45905082 - 45904947
Alignment:
Q  154 ttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctacagg-ttgagtcacgaccaggtcg 252  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||| || |||||| ||||||| ||||    
T  45905082 ttcagaagcgtacctttttaataaagtcaaaatcaccaccgaaaatattatcatgttgagtcttcttgaagtcctaccggattgagttacgaccatgtcg 45904983  T
Q  253 ctttctttaagacaaatcacagcactacctgaaatt 288  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45904982 ctttctttaagacaaatcacagcactacccgaaatt 45904947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 154 - 288
Target Start/End: Complemental strand, 45904626 - 45904491
Alignment:
Q  154 ttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggttgagtcacgaccaggtcg 252  Q
    |||||||||||||||||||||||||||| |||||| || | || |||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  45904626 ttcagaagcgtacctttttaataaagtcaaaatcatcatcaaaaatattaccatgttgagtcttcttgaagtcctaccgggttgagtcacgaccatgtcg 45904527  T
Q  253 ctttctttaagacaaatcacagcactacctgaaatt 288  Q
     |||||||||||||||||||||||||||| ||||||    
T  45904526 ttttctttaagacaaatcacagcactacccgaaatt 45904491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 200
Target Start/End: Complemental strand, 795572 - 795511
Alignment:
Q  139 ttgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagata 200  Q
    ||||||||||||  ||||||||  |||||||||||||||| |||||||||||||||||||||    
T  795572 ttgttgtttttcgagttcagaaaagtacctttttaataaaatcgaaatcaccaccgaagata 795511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 27605236 - 27605185
Alignment:
Q  230 caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacc 281  Q
    |||||||||||||||||| |||||| |||||||||||  || ||||||||||    
T  27605236 caggttgagtcacgaccaagtcgctctctttaagacatttcgcagcactacc 27605185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 235 - 266
Target Start/End: Original strand, 54270644 - 54270675
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagaca 266  Q
    ||||||||||||||||||||||||||||||||    
T  54270644 tgagtcacgaccaggtcgctttctttaagaca 54270675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 3033637 - 3033671
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  3033637 aggttgagtcacgaccaggtcgctctctttaagac 3033671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 3477041 - 3477011
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  3477041 tgagtcacgaccaggtcgctttctttaagac 3477011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 3482518 - 3482488
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  3482518 tgagtcacgaccaggtcgctttctttaagac 3482488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 3672579 - 3672613
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  3672579 aggttgagtcacgaccaggtcgctctctttaagac 3672613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 3692611 - 3692645
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  3692611 aggttgagtcacgaccaggtcgctctctttaagac 3692645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 7571318 - 7571284
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  7571318 aggttgagtcacgaccaggtcgctctctttaagac 7571284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 8069673 - 8069707
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  8069673 aggttgagtcacgaccaggtcgctctctttaagac 8069707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 8887923 - 8887957
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  8887923 aggttgagtcacgaccaggtcgctctctttaagac 8887957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 17364063 - 17364093
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  17364063 tgagtcacgaccaggtcgctttctttaagac 17364093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 17368719 - 17368749
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  17368719 tgagtcacgaccaggtcgctttctttaagac 17368749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 18467218 - 18467252
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  18467218 aggttgagtcacgaccaggtcgctctctttaagac 18467252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 23666223 - 23666189
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  23666223 aggttgagtcacgaccaggtcgctctctttaagac 23666189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 24038471 - 24038437
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  24038471 aggttgagtcacgaccaggtcgctctctttaagac 24038437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 29350233 - 29350267
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||| |||||||||||||||||    
T  29350233 aggttgagtcacgaccatgtcgctttctttaagac 29350267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 34129264 - 34129234
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  34129264 tgagtcacgaccaggtcgctttctttaagac 34129234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 39775828 - 39775794
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  39775828 aggttgagtcacgaccaggtcgctctctttaagac 39775794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 33089441 - 33089408
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  33089441 ggttgagtcacgaccaggtcgctctctttaagac 33089408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 53358239 - 53358272
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||| |||||||||||||||||||||    
T  53358239 ggttgagtcacggccaggtcgctttctttaagac 53358272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 1688980 - 1688952
Alignment:
Q  237 agtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||    
T  1688980 agtcacgaccaggtcgctttctttaagac 1688952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 10321444 - 10321472
Alignment:
Q  237 agtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||    
T  10321444 agtcacgaccaggtcgctttctttaagac 10321472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 130 - 279
Target Start/End: Complemental strand, 35856 - 35706
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta 229  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  35856 tgttgtaaattgttgtttttcgggttcataagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttaaagtccta 35757  T
Q  230 -caggttgagtcacgaccaggtcgctttctttaagacaaatcacagcacta 279  Q
     | ||||||||||||| |||| ||||||||||||||||||| |||||||||    
T  35756 ccgggttgagtcacgatcagggcgctttctttaagacaaatgacagcacta 35706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 1423 - 1268
Alignment:
Q  134 gtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctac-ag 232  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||  |    
T  1423 gtaaattgttgtttttctagttcataagcgtaccttcttaataaagtcgaaatcaccaccgaagatattaccatgttaagtattcttgaagtcctactgg 1324  T
Q  233 gttgagtcacgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||    
T  1323 gttgagtcacgaccaggtcgctttctttaagacaaatcacggcactacccgaaatt 1268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 136 - 281
Target Start/End: Complemental strand, 48052 - 47906
Alignment:
Q  136 aaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtccta-caggt 234  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  48052 aaattgttgtttttcgggttcagaagcgtaacttttcaataaagtcaaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctaccgggt 47953  T
Q  235 tgagtcacgaccaggtcgctttctttaagacaaatcacagcactacc 281  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||    
T  47952 tgagtcacgaccaggtcgctttctataagacaaatcagggcactacc 47906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 137 - 281
Target Start/End: Complemental strand, 53094 - 52949
Alignment:
Q  137 aattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctacagg-tt 235  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |||| || ||    
T  53094 aattgttgtttttcgcgttcagaagcgtaccttttcaataaagtcgaaatcaccatcgaagatattatcatgttgagtcttcttgaagttctaccggatt 52995  T
Q  236 gagtcacgaccaggtcgctttctttaagacaaatcacagcactacc 281  Q
    |||||||||  ||||||||||||||||||||||||||  |||||||    
T  52994 gagtcacgattaggtcgctttctttaagacaaatcacgacactacc 52949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 37010 - 37040
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  37010 tgagtcacgaccaggtcgctttctttaagac 37040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 129 - 267
Target Start/End: Complemental strand, 12662811 - 12662671
Alignment:
Q  129 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaa-gtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcc 227  Q
    |||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||| |||||||||||| | |||||||||||||||||||||    
T  12662811 ctgttgtaaattgttgtttttcgggttcagaagtgtacctttttaataaaagtcgaaatcaccgccgaagatattatcttgttgagtcttcttgaagtcc 12662712  T
Q  228 ta-caggttgagtcacgaccaggtcgctttctttaagacaa 267  Q
    || | ||||||||||| ||||||||||||||||||||||||    
T  12662711 taccgggttgagtcacaaccaggtcgctttctttaagacaa 12662671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 142 - 288
Target Start/End: Complemental strand, 6113162 - 6113015
Alignment:
Q  142 ttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccatgttgagtcttcttgaagtcctac-aggttgagtc 240  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||||  |||||||||    
T  6113162 ttgtttttcgggttcagaaacgtacctttttgataaaatcgaaatcatcaccgaagatattatcatgttgagtcttattgaagtcctactgggttgagtc 6113063  T
Q  241 acgaccaggtcgctttctttaagacaaatcacagcactacctgaaatt 288  Q
    |||| ||||| |||||||||||||| ||||||  || |||||||||||    
T  6113062 acgatcaggttgctttctttaagacgaatcacgacattacctgaaatt 6113015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 5601073 - 5601038
Alignment:
Q  230 caggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||||||||||||||||    
T  5601073 caggttgagtcacgaccaggtcgctttctttaagac 5601038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 230 - 265
Target Start/End: Complemental strand, 12183101 - 12183066
Alignment:
Q  230 caggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||||| ||||||||||    
T  12183101 caggttgagtcacgaccaggtcgctctctttaagac 12183066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 6728430 - 6728400
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  6728430 tgagtcacgaccaggtcgctttctttaagac 6728400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 8747777 - 8747811
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  8747777 aggttgagtcacgaccaggtcgctctctttaagac 8747811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 21396699 - 21396729
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  21396699 tgagtcacgaccaggtcgctttctttaagac 21396729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 21401755 - 21401785
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  21401755 tgagtcacgaccaggtcgctttctttaagac 21401785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 24191478 - 24191448
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  24191478 tgagtcacgaccaggtcgctttctttaagac 24191448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 24192575 - 24192545
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  24192575 tgagtcacgaccaggtcgctttctttaagac 24192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 31981560 - 31981590
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  31981560 tgagtcacgaccaggtcgctttctttaagac 31981590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 34142080 - 34142110
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  34142080 tgagtcacgaccaggtcgctttctttaagac 34142110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 34154696 - 34154726
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  34154696 tgagtcacgaccaggtcgctttctttaagac 34154726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 3901909 - 3901942
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  3901909 ggttgagtcacgaccaggtcgctctctttaagac 3901942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 19478145 - 19478178
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  19478145 ggttgagtcacgaccaggtcgctctctttaagac 19478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 62930 - 63007
Alignment:
Q  130 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccat 207  Q
    |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  62930 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatattaccat 63007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 266
Target Start/End: Original strand, 4069 - 4104
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagaca 266  Q
    |||||||||||||||||||||||| |||||||||||    
T  4069 aggttgagtcacgaccaggtcgctctctttaagaca 4104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0594 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0594
Description:

Target: scaffold0594; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 9303 - 9273
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  9303 tgagtcacgaccaggtcgctttctttaagac 9273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0517 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 3563 - 3593
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  3563 tgagtcacgaccaggtcgctttctttaagac 3593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 7099 - 7133
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  7099 aggttgagtcacgaccaggtcgctctctttaagac 7133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Complemental strand, 9987 - 9953
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  9987 aggttgagtcacgaccaggtcgctctctttaagac 9953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0166 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 13835 - 13805
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  13835 tgagtcacgaccaggtcgctttctttaagac 13805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 265
Target Start/End: Original strand, 83061 - 83095
Alignment:
Q  231 aggttgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||| ||||||||||    
T  83061 aggttgagtcacgaccaggtcgctctctttaagac 83095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 31545 - 31575
Alignment:
Q  235 tgagtcacgaccaggtcgctttctttaagac 265  Q
    |||||||||||||||||||||||||||||||    
T  31545 tgagtcacgaccaggtcgctttctttaagac 31575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Complemental strand, 34067 - 34034
Alignment:
Q  232 ggttgagtcacgaccaggtcgctttctttaagac 265  Q
    ||||||||||||||||||||||| ||||||||||    
T  34067 ggttgagtcacgaccaggtcgctctctttaagac 34034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 203
Target Start/End: Original strand, 43027 - 43091
Alignment:
Q  138 attgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatcaccaccgaagatatta 203  Q
    |||||||||||||  ||||||||  ||||||||| || ||| ||||||| ||||||||||||||||    
T  43027 attgttgtttttcgagttcagaaaagtacctttt-aacaaaatcgaaattaccaccgaagatatta 43091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University