View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_low_15 (Length: 252)

Name: NF12642_low_15
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_low_15
NF12642_low_15
[»] chr3 (13 HSPs)
chr3 (18-242)||(23499420-23499644)
chr3 (18-236)||(23478941-23479159)
chr3 (18-242)||(23447652-23447876)
chr3 (18-236)||(23454417-23454635)
chr3 (18-242)||(23468883-23469107)
chr3 (18-234)||(23352299-23352515)
chr3 (18-241)||(23440273-23440496)
chr3 (18-241)||(23472802-23473025)
chr3 (18-181)||(23463639-23463802)
chr3 (18-181)||(23386634-23386797)
chr3 (18-236)||(23405008-23405226)
chr3 (18-149)||(23398297-23398427)
chr3 (155-187)||(35768945-35768977)
[»] scaffold0201 (1 HSPs)
scaffold0201 (18-241)||(11803-12026)


Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23499420 - 23499644
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  23499420 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctctaacaaaatctttaccctgtccactcaaca 23499519  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  23499520 agcatgcgatgtctagaaatatggccttttgacaacgatctaagtcagcataactaaattttaacacattataaatcttttgattgggaatcttttggag 23499619  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    ||||||||||||||||||| |||||    
T  23499620 ctttttcagttcattttcccatgct 23499644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23478941 - 23479159
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  23478941 atgagagctttatctagaaggacgtctatcccacttattgcaaagaaatcagaagcttccagtagatctcttacaaaatctttaccctgtccactcaaca 23479040  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| ||||||| ||| ||| |||||||||||||||||||    
T  23479041 agcatgcgatgtctagaaatatggccttttgacaacgatctaactcatcataactcaattttaacacattatgaatttttcgattgggaatcttttggag 23479140  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||||||||    
T  23479141 ctttttcaattcattttcc 23479159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23447652 - 23447876
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||| | | |||| ||||||    
T  23447652 atgagagccttatctagaaggacttctatcccacttattgcaaagaactcacaagcttccaatagatctcttacaaaagttttatcttttccattcaaca 23447751  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||||| |||||||||||||||||||    
T  23447752 agcatgcgatgtctagaaatatggccttctgacaatgatctaaatcatcataactcaattttaacacatcataaatctttcgattgggaatcttttggag 23447851  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    ||||||||||||||||||| |||||    
T  23447852 ctttttcagttcattttcccatgct 23447876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23454417 - 23454635
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||| ||||||||||||||| ||||||||||||| ||||||||||||| |||||||||| || | |||||| |||  ||||| || | | |||| ||    
T  23454417 atgagagatttatctagaaggacttctatcccacttactgcaaagaactcacaagcttccaaaagttttcttacgaaagatttactctcttctctcagca 23454516  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||   ||||||||||||||||||    
T  23454517 agcatgcgttgtctagaaatatggccttttgacaacaatctaagtcatcataactcaattttaatacattgtaaattttcgtattgggaatcttttggag 23454616  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||||||||    
T  23454617 ctttttcaattcattttcc 23454635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 23468883 - 23469107
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| ||||||||| || ||||||||||   | |||||||||||| || | ||||||||||||||  || | | |||||||    
T  23468883 atgagagctttatctagaaggacttctatcccaattgttgcaaagaatcgacaagcttccaatacatgttttacaaaatctttatgctcttctctcaaca 23468982  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||| |||| ||   ||||||||||||||||||    
T  23468983 agcatgcgatatctagaaatatggccttttgacaacaatctaagtcatcataactcaattttaacacattaaaaattttcctattgggaatcttttggag 23469082  T
Q  218 ctttttcagttcattttcctatgct 242  Q
    | |||||| |||||| ||| |||||    
T  23469083 cattttcaattcattgtcccatgct 23469107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 23352299 - 23352515
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| || ||||||||| |||||||||||||| |||||||||| | || | |||||  |  ||||| || ||| || || |    
T  23352299 atgagagctttatctagaaggacttcaatcccactttttgcaaagaactcacaagcttccaacatatgtgttacatgaaatttactctctcctctaaaaa 23352398  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||| ||| ||||||||||||||||||||| ||  ||||||||||||||||||||||||||| ||||| ||||| ||   ||||||||||||||| ||    
T  23352399 agcatgtgatatctagaaatatggccttttgagaacaatctaagtcatcataactcaattttaacacattgtaaattttcctattgggaatcttttgtag 23352498  T
Q  218 ctttttcagttcatttt 234  Q
    |||||||| ||||||||    
T  23352499 ctttttcaattcatttt 23352515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23440273 - 23440496
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||||||||||| |||||| ||||||||||||  ||||||||||| | |||||||||| | |||| ||| |||   ||||  || ||| ||||| |    
T  23440273 atgagagctttatctaaaaggacttctatcccactttctgcaaagaacttacaagcttccaacaaatctattataaatattttatgctctcctctcaaaa 23440372  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||| |||||||||||||| | ||  |||||||||||||||||| |||||||| ||  ||||||| ||   ||| |||||||||| |||    
T  23440373 agcatgcaatatctaaaaatatggccttttaaaaaaaatctaagtcatcataactgaattttaacacggtataaattttcctatttggaatcttttcgag 23440472  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  23440473 ctttttcaattcattttcccatgc 23440496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 23472802 - 23473025
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||||||||||||||| || ||| ||||||||||||  ||||||||||||| |||||||||| | |||| ||| |||   ||||  || ||| ||||| |    
T  23472802 atgagagctttatctaaaacgacttctatcccactttctgcaaagaactcacaagcttccaacaaatctattataaatattttatgctctcctctcaaaa 23472901  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||| ||||||||||| |||| ||  |||||||||||||||||| |||||||| ||  ||||||| ||   ||| |||||||||| |||    
T  23472902 agcatgcaatatctaaaaatatggcctgttgaaaaaaatctaagtcatcataactgaattttaacacgatataaattttcctatttggaatcttttcgag 23473001  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  23473002 ctttttcaattcattttcccatgc 23473025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 23463639 - 23463802
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||| |||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||||   ||||  || ||| |||||||    
T  23463639 atgaaagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaagaaatgtatcacaaacattttattctctcctctcaaca 23463738  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaa 181  Q
    |||||||||| |||||||||||| |||||||| ||  |||||||| ||||||||||||||||||    
T  23463739 agcatgcgatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaa 23463802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 23386634 - 23386797
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    |||| |||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||||   ||||   | ||| |||||||    
T  23386634 atgaaagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaagaaatgtatcacaaatattttattatctcctctcaaca 23386733  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaa 181  Q
    |||||||||| |||||||||||| |||||||| ||  |||||||| ||||||||||||||||||    
T  23386734 agcatgcgatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaa 23386797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 23405008 - 23405226
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| ||||||||||||  ||||||||||||| |||||||||| | || | | |||     ||||   | ||| |||||||    
T  23405008 atgagagctttatctagaaggacttctatcccactttctgcaaagaactcacaagcttccaacaaatgtatcacagccattttattatctcctctcaaca 23405107  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    ||||||| || |||||||||||| |||||||| ||  |||||||| |||||||||||||||||| | ||| | ||| |    ||| |||||||||| |||    
T  23405108 agcatgcaatatctagaaatatgtccttttgaaaaatatctaagttatcataactcaattttaacatattgttaatttccccatttggaatcttttcgag 23405207  T
Q  218 ctttttcagttcattttcc 236  Q
    |||||||| ||||| ||||    
T  23405208 ctttttcaattcatcttcc 23405226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 23398297 - 23398427
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||    |||||||| | |||| ||||||||   |||  || ||| |||||      
T  23398297 atgagagcttt-tctagaaggacttctatcccacttattgcaaagaactctcttgcttccaacatatctgttacaaaaaaattattctctcctctcaaac 23398395  T
Q  118 agcatgcgatgtctagaaatatggccttttga 149  Q
    ||||| |||| ||||||||| |||||||||||    
T  23398396 agcattcgatatctagaaatgtggccttttga 23398427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 35768977 - 35768945
Alignment:
Q  155 atctaagtcatcataactcaattttaatacatt 187  Q
    ||||||||||||||||||||||||||| |||||    
T  35768977 atctaagtcatcataactcaattttaacacatt 35768945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0201 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 11803 - 12026
Alignment:
Q  18 atgagagctttatctagaaggacgtctatcccacttattgcaaagaactcagaagcttccaatagatctcttacaaaatctttaccctgtccactcaaca 117  Q
    ||||||||||||||||||||||| | || ||||||||||||| |||||||| |||||||||| | || | ||||| ||  || |  || ||| ||  | |    
T  11803 atgagagctttatctagaaggacttttaccccacttattgcatagaactcacaagcttccaacatatgtgttacataaatttcatgctttcctctataaa 11902  T
Q  118 agcatgcgatgtctagaaatatggccttttgacaatgatctaagtcatcataactcaattttaatacattataaatcttttgattgggaatcttttggag 217  Q
    |||||||||| || |||||||||||||||| |  |  ||||||||||||||||||||||||||| ||||| ||||| |    ||| |||||||||| |||    
T  11903 agcatgcgatatccagaaatatggccttttcagtaaaatctaagtcatcataactcaattttaacacattgtaaatttccccatttggaatctttttgag 12002  T
Q  218 ctttttcagttcattttcctatgc 241  Q
    |||||||| |||||||||| ||||    
T  12003 ctttttcaattcattttcccatgc 12026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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