View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12642_low_17 (Length: 218)
Name: NF12642_low_17
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12642_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 202
Target Start/End: Complemental strand, 33379064 - 33378871
Alignment:
| Q |
9 |
agaagcataggtcactatcttggtcggcatgattgtgagccctgtaaagatcgtaagcatgtggcaagagtctcacaaaagtagttccaaagtaaaatga |
108 |
Q |
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| T |
33379064 |
agaagtataggtcactatcttggtcggcataattgtgagccctgtaaagatcgtaagcatgtggcaagagtctcacaaaagtagttccaaagtaaaatga |
33378965 |
T |
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| Q |
109 |
gcatgaaagaacattctcattcatatttgaaaacaagtttagaatgacttgtggcacaagaaagcaatccaataccaaaccaccataagatttt |
202 |
Q |
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| T |
33378964 |
gcatgaaagaacattctcattcatatttgaaaacaagtttagaatgacttgtggcacaagaaagcaatccaataccaaaccaccataagatttt |
33378871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 49 - 201
Target Start/End: Complemental strand, 33385132 - 33384980
Alignment:
| Q |
49 |
cctgtaaagatcgtaagcatgtggcaagagtctcacaaaagtagttccaaagtaaaatgagcatgaaagaacattctcattcatatttgaaaacaagttt |
148 |
Q |
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||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
33385132 |
cctgtaaagatcgtaggcatgcggcaagagtctcacaaaagtagttccaaagtaaaatgaacatgaaagaacattctcattcatatttgaaaacaagttt |
33385033 |
T |
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| Q |
149 |
agaatgacttgtggcacaagaaagcaatccaataccaaaccaccataagattt |
201 |
Q |
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| T |
33385032 |
agaattacttgtggcacaagaaagccatccaataccaaaccgccataagattt |
33384980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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