View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12642_low_3 (Length: 476)

Name: NF12642_low_3
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12642_low_3
NF12642_low_3
[»] chr3 (4 HSPs)
chr3 (13-383)||(11015854-11016224)
chr3 (13-377)||(11024866-11025226)
chr3 (13-223)||(11006291-11006501)
chr3 (48-184)||(47452271-47452407)
[»] chr4 (32 HSPs)
chr4 (64-184)||(7822547-7822667)
chr4 (30-184)||(7770982-7771136)
chr4 (79-181)||(7813061-7813163)
chr4 (77-181)||(7800218-7800322)
chr4 (49-184)||(7904610-7904745)
chr4 (30-184)||(7789667-7789821)
chr4 (54-178)||(45372427-45372551)
chr4 (82-182)||(48156825-48156925)
chr4 (14-180)||(48862823-48862992)
chr4 (48-203)||(48890968-48891123)
chr4 (82-180)||(48735713-48735811)
chr4 (55-184)||(7238091-7238220)
chr4 (54-182)||(48170956-48171087)
chr4 (81-181)||(45366618-45366718)
chr4 (49-199)||(7877283-7877433)
chr4 (80-183)||(7907904-7908007)
chr4 (77-183)||(7774222-7774328)
chr4 (13-185)||(33134152-33134327)
chr4 (49-180)||(48148047-48148181)
chr4 (66-203)||(48902509-48902646)
chr4 (81-183)||(49044626-49044728)
chr4 (55-151)||(7765232-7765328)
chr4 (77-181)||(48870123-48870227)
chr4 (77-181)||(48885809-48885913)
chr4 (81-181)||(48898303-48898403)
chr4 (48-183)||(50668622-50668757)
chr4 (82-144)||(47207552-47207614)
chr4 (48-137)||(37827358-37827447)
chr4 (81-138)||(49048996-49049053)
chr4 (48-184)||(49041502-49041638)
chr4 (48-184)||(50251172-50251308)
chr4 (62-121)||(50672161-50672220)
[»] chr8 (6 HSPs)
chr8 (52-172)||(12199897-12200017)
chr8 (52-172)||(12444325-12444445)
chr8 (54-178)||(4032286-4032410)
chr8 (21-147)||(15348477-15348603)
chr8 (64-171)||(12194892-12194999)
chr8 (64-171)||(12439320-12439427)
[»] chr6 (2 HSPs)
chr6 (81-183)||(21015355-21015457)
chr6 (30-184)||(21979990-21980144)
[»] scaffold0508 (1 HSPs)
scaffold0508 (48-146)||(11878-11976)
[»] chr5 (6 HSPs)
chr5 (16-146)||(29695768-29695898)
chr5 (81-144)||(29712866-29712929)
chr5 (48-144)||(29687669-29687765)
chr5 (82-143)||(178638-178699)
chr5 (82-151)||(1812036-1812105)
chr5 (81-144)||(42562728-42562791)
[»] chr1 (5 HSPs)
chr1 (64-146)||(24340030-24340112)
chr1 (48-143)||(24309796-24309891)
chr1 (85-182)||(24415417-24415514)
chr1 (82-138)||(24322086-24322142)
chr1 (64-182)||(24366735-24366853)


Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 11015854 - 11016224
Alignment:
Q  13 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| |    
T  11015854 atgaacacaattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgc 11015953  T
Q  113 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcc 212  Q
    | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11015954 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcc 11016053  T
Q  213 tcctctgcaatcgatgttttgtttctcttcgtcttggattactaatttaatttgtatgatggtgatatataaagtgatgatccttctttggtactcttca 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  11016054 tcctctgcaatcgatgttttgtttctcttcgtcttggattactaatttaatttgtgtgatggtgatatataaagtgatgatccttctttggtactcttca 11016153  T
Q  313 caagttcattgttgaatactctttcctacatggaatgcgatgaatcaaagaacattatgtattgctatgcc 383  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11016154 caagttcattgttgaatactctttcctacatggaatgcgatgaatcaaagaacattatgtattgctatgcc 11016224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 13 - 377
Target Start/End: Original strand, 11024866 - 11025226
Alignment:
Q  13 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 112  Q
    ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |    
T  11024866 atgaacacaattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgc 11024965  T
Q  113 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcc 212  Q
    | || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||||||||||    
T  11024966 atttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattcatgaggcaaatacaggtcggtcttcttctccatctgtcttcc 11025065  T
Q  213 tcctctgcaatcgatgttttgtttctcttcgtcttggattactaatttaatttgtatgatggtgatatataaagtgatgatccttctttggtactcttca 312  Q
    |||| |||||| | |||||||||||| ||||| ||||||||||||||||||  ||   |||||||||||||||||  | |||||||||||||||||||||    
T  11025066 tcctatgcaattgttgttttgtttctattcgttttggattactaatttaatccgt---atggtgatatataaagtattaatccttctttggtactcttca 11025162  T
Q  313 caagttcattgttgaatactctttcctacatggaatgcgatgaatcaaagaacattatgtattgc 377  Q
    ||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||    
T  11025163 caagttcattgttcaatactc-ttcctacatggaatgcgatgagtcaaagaacattatatattgc 11025226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 13 - 223
Target Start/End: Original strand, 11006291 - 11006501
Alignment:
Q  13 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacac 112  Q
    |||||||||||||||||||||||||||  |||| |||| |||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||    
T  11006291 atgaacacaattctattagtgtgtgttctagtggaaaggtcaaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacac 11006390  T
Q  113 acttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccatctgtcttcc 212  Q
    |||| ||||||||||| ||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11006391 acttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattcatgaggcagatacaggccggtcttcgtctccatctgtcttcc 11006490  T
Q  213 tcctctgcaat 223  Q
    | |||||||||    
T  11006491 ttctctgcaat 11006501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 47452271 - 47452407
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 147  Q
    |||||||||||| | ||||||||||  | |||||||||||||||| |||||||||||| |||  ||||| || |||| ||||||||||||||| ||||||    
T  47452271 aagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctc 47452370  T
Q  148 aacatgatttgtattatcaattcatgaggcagataca 184  Q
    | || ||| || |||||||||||| |||| |||||||    
T  47452371 accaagatctggattatcaattcaagaggtagataca 47452407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 9e-31; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 64 - 184
Target Start/End: Complemental strand, 7822667 - 7822547
Alignment:
Q  64 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 163  Q
    ||||||||||   |||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | ||||    
T  7822667 tttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggatta 7822568  T
Q  164 tcaattcatgaggcagataca 184  Q
    |||| | ||||||||||||||    
T  7822567 tcaaatgatgaggcagataca 7822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 7771136 - 7770982
Alignment:
Q  30 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 129  Q
    |||||||||||||| |  ||||| |||||| || ||| |||||| | |||||||||||||||| ||||| ||||||||||| || || |||| |||||||    
T  7771136 agtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacatataaga 7771037  T
Q  130 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 184  Q
    ||||||||||| ||||||| ||  ||||| ||||| | |||||||||||||||||    
T  7771036 gacttcaccggcaacctcatcagaatttggattattagttcatgaggcagataca 7770982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 7813163 - 7813061
Alignment:
Q  79 tcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggca 178  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||| ||||||||||    
T  7813163 tcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgaggca 7813064  T
Q  179 gat 181  Q
    |||    
T  7813063 gat 7813061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 7800322 - 7800218
Alignment:
Q  77 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 176  Q
    ||||||||| |||||| |||||||| |||||||||||||| |||||||||||| |||||||||| |||||||||| |||| | |||||||| ||||||||    
T  7800322 gatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctcaacaagattaggattatcaaatcatgagg 7800223  T
Q  177 cagat 181  Q
    |||||    
T  7800222 cagat 7800218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 49 - 184
Target Start/End: Complemental strand, 7904745 - 7904610
Alignment:
Q  49 agttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctca 148  Q
    |||| |||||| || |||||||||| | |||||||||||||||| |||||| ||||||||||||| || |||||||||||||||||||| || |||| ||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccaca 7904646  T
Q  149 acatgatttgtattatcaattcatgaggcagataca 184  Q
     || |||||| || ||||||||| |||| |||||||    
T  7904645 tcaagatttgaataatcaattcacgaggaagataca 7904610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 30 - 184
Target Start/End: Complemental strand, 7789821 - 7789667
Alignment:
Q  30 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 129  Q
    |||||||||||| | |  ||||| |||||| || ||| |||||| | |||| ||||||| ||| ||||| ||||||||||| || || |||| |||||||    
T  7789821 agtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataaga 7789722  T
Q  130 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 184  Q
    ||||||||||| ||||||| ||  ||||| ||||||| |||||||||||||||||    
T  7789721 gacttcaccggcaacctcatcagaatttggattatcagttcatgaggcagataca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 45372427 - 45372551
Alignment:
Q  54 aaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatg 153  Q
    |||||| || |||||||| | | |||||||||||| ||| ||||| |||||||||||||| || ||||||||||||||||||||||| ||||| |  |      
T  45372427 aaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtaga 45372526  T
Q  154 atttgtattatcaattcatgaggca 178  Q
    ||||| || ||||||||||||||||    
T  45372527 atttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 82 - 182
Target Start/End: Original strand, 48156825 - 48156925
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagat 181  Q
    ||||||||||| ||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||  || | |||||| |||||||||||| | |||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattcaagtggcagat 48156924  T
Q  182 a 182  Q
    |    
T  48156925 a 48156925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 48862992 - 48862823
Alignment:
Q  14 tgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaac 110  Q
    |||||| ||||||||  ||||||||||| |    ||||| |||||| || |||||||||| | |||||   ||||||||||| ||||| ||||| |||||    
T  48862992 tgaacataattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaac 48862893  T
Q  111 acacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
     || || ||||| ||||||||||||||||||||||| | || |||| | || ||||||||||||||||||    
T  48862892 gcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattcatgaggcaga 48862823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 48 - 203
Target Start/End: Complemental strand, 48891123 - 48890968
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 147  Q
    ||||| ||||||||| |||||||| | | |||| |||| |||||| ||||| ||||||||||| || || ||||||||||||||||| |||| |||||||    
T  48891123 aagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctc 48891024  T
Q  148 aacatgatttgtattatcaattcatgaggcagatacaggccggtcttcttctccat 203  Q
    ||||| ||||  || ||||| || ||||| |||| |||    ||||||||||||||    
T  48891023 aacataatttcgataatcaactcgtgaggaagatgcagtagtgtcttcttctccat 48890968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 82 - 180
Target Start/End: Original strand, 48735713 - 48735811
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
    ||||||||||| ||||| |||||||||||||| || ||||| |||||||||||||||||||||||||  |  ||||| | |||||| ||||||||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgaggcaga 48735811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 184
Target Start/End: Original strand, 7238091 - 7238220
Alignment:
Q  55 aaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatga 154  Q
    ||||| || |||||||||| | | |||||||||||||| ||||| |||||||||||||| || ||||  |||||||||||||| || ||||||| ||  |    
T  7238091 aaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaa 7238190  T
Q  155 tttgtattatcaattcatgaggcagataca 184  Q
    |||| || || | |||||||||||||||||    
T  7238191 tttggatgattagttcatgaggcagataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 54 - 182
Target Start/End: Original strand, 48170956 - 48171087
Alignment:
Q  54 aaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaac 150  Q
    ||||||||| |||||||||| | |||||   ||||||||||  ||||| |||||||||||||| || ||||||| |||||||||||||| |||||||| |    
T  48170956 aaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagc 48171055  T
Q  151 atgatttgtattatcaattcatgaggcagata 182  Q
    |  ||||| | |||||||||| ||| ||||||    
T  48171056 agaatttgaactatcaattcaagagccagata 48171087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 81 - 181
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
    |||||||||||| |||||  |||||||||| ||||| |||||||||||||||||||| |||||||| |  | |||||| || |||||||||||||| |||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  181 t 181  Q
    |    
T  45366718 t 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 49 - 199
Target Start/End: Complemental strand, 7877433 - 7877283
Alignment:
Q  49 agttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctca 148  Q
    |||| |||||| || |||||||| ||  |||||||||||||||| ||||||  ||||||||  || || ||||||||||||||||||||| | ||||  |    
T  7877433 agttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaa 7877334  T
Q  149 acatgatttgtattatcaattcatgaggcagatacaggccg-gtcttcttct 199  Q
     || |||||| || |||||||||||||| |||||| ||||| ||||||||||    
T  7877333 tcaggatttggataatcaattcatgaggaagatac-ggccgtgtcttcttct 7877283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 80 - 183
Target Start/End: Complemental strand, 7908007 - 7907904
Alignment:
Q  80 cagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcag 179  Q
    ||||||||||||| ||||||||||||| |||| |||| |||||| |||||||||||||||| |||||||  | ||| || |  |||||||||||||| ||    
T  7908007 cagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggatctggaaaatcaattcatgaggaag 7907908  T
Q  180 atac 183  Q
    ||||    
T  7907907 atac 7907904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 7774222 - 7774328
Alignment:
Q  77 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 176  Q
    |||||||||||||||| ||||||  |||||||||||| || ||| | ||||||||||||||||| | || || || |||||| || ||||||||||||||    
T  7774222 gatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgagg 7774321  T
Q  177 cagatac 183  Q
     ||||||    
T  7774322 aagatac 7774328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 33134152 - 33134327
Alignment:
Q  13 atgaacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaa 109  Q
    |||||||||||| || ||||||||||||  | |   | || |||||| || |||||||||| | |||||   ||||||||||| || || | ||||||||    
T  33134152 atgaacacaattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaa 33134251  T
Q  110 cacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagatacag 185  Q
    | || || ||||| |||||||||||||||||||| |||||||  ||  | || |||||||||||||||||||||||    
T  33134252 cgcatttgaaacgaataagagacttcaccggtaatctcaacagaataaggatgatcaattcatgaggcagatacag 33134327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 180
Target Start/End: Original strand, 48148047 - 48148181
Alignment:
Q  49 agttcaaaatgcgattttgcaaagttatgatca---gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacc 145  Q
    ||||||||||| || ||||| |||| | |||||   ||||||||||| ||||| |||||||| ||||| || ||||| |||||||||||||| |||||||    
T  48148047 agttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaacgaataagagacttcactggtaacc 48148146  T
Q  146 tcaacatgatttgtattatcaattcatgaggcaga 180  Q
    |  | | |||||| | ||||||||||| |||||||    
T  48148147 ttgaaaggatttgaactatcaattcatcaggcaga 48148181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 203
Target Start/End: Complemental strand, 48902646 - 48902509
Alignment:
Q  66 tgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatc 165  Q
    ||||||||  |||||||| |||||||| ||||| |||||||||||||| || ||||| || |||||||| ||||| |||| |  ||  ||||| || |||    
T  48902646 tgcaaagtgctgatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatc 48902547  T
Q  166 aattcatgaggcagatacaggccg-gtcttcttctccat 203  Q
    ||||||||||| |||||| ||| | ||||||||||||||    
T  48902546 aattcatgaggtagatac-ggcagtgtcttcttctccat 48902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 81 - 183
Target Start/End: Original strand, 49044626 - 49044728
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
    |||||||||||| |||||| |||||||||||||||| ||||||| ||||||| |||| || ||||||| ||  ||  | || ||||| ||||||||||||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcagaataaggatgatcaagtcatgaggcaga 49044725  T
Q  181 tac 183  Q
    |||    
T  49044726 tac 49044728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 7765328 - 7765232
Alignment:
Q  55 aaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 151  Q
    ||||| || |||||||||| | |||||||||||| ||| |||||| |||||||||  ||||| |||  ||  |||||||||||||||||||||||||    
T  7765328 aaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaaca 7765232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 48870227 - 48870123
Alignment:
Q  77 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 176  Q
    |||| ||||||||| | ||||| ||||||||||| || || ||||| |||||||| |||||||||| ||||| ||  ||||| | ||||||||||||| |    
T  48870227 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48870128  T
Q  177 cagat 181  Q
    |||||    
T  48870127 cagat 48870123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 48885913 - 48885809
Alignment:
Q  77 gatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgagg 176  Q
    |||| ||||||||| | ||||| ||||||||||| || || ||||| |||||||| |||||||||| ||||| ||  ||||| | ||||||||||||| |    
T  48885913 gatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaactatcaattcatgatg 48885814  T
Q  177 cagat 181  Q
    |||||    
T  48885813 cagat 48885809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 81 - 181
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
    ||||||||| || ||||| ||||||||||||||||| |||||| ||||||||||||| ||||  |||| ||  ||||| || | |||||||||||| |||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  181 t 181  Q
    |    
T  48898303 t 48898303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 183
Target Start/End: Complemental strand, 50668757 - 50668622
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 147  Q
    |||||||||||| || || ||||| || ||||| ||||| ||||| ||||| || |||||||| ||||| |||||||||||| | ||||| || ||||||    
T  50668757 aagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctc 50668658  T
Q  148 aacatgatttgtattatcaattcatgaggcagatac 183  Q
    | ||  ||||| || |||||||| | | ||||||||    
T  50668657 accaaaatttgaatgatcaattcgtaatgcagatac 50668622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 82 - 144
Target Start/End: Complemental strand, 47207614 - 47207552
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 144  Q
    ||||| ||||| || || ||||| ||||||| |||||||||||||||||||||||||||||||    
T  47207614 gagatgagagaaaatcaagacttccaaacactcttaaaacgtataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 137
Target Start/End: Original strand, 37827358 - 37827447
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcac 137  Q
    ||||| |||||| || ||||||||||   ||| ||| ||||||| |||||||||||||||||| ||  |||||| |||||||||||||||    
T  37827358 aagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 49048996 - 49049053
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcacc 138  Q
    |||||||||||| |||||| |||||||||||||||| ||||||| ||||||| |||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcacc 49049053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 49041502 - 49041638
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 147  Q
    ||||| |||||| || |||||||| |   |||||||||||||||| ||||| ||||| ||||| || || ||||  |||||||||||||| || || |||    
T  49041502 aagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctc 49041601  T
Q  148 aacatgatttgtattatcaattcatgaggcagataca 184  Q
    |  |  ||| | || ||||||||||||| ||||||||    
T  49041602 attagaattaggatgatcaattcatgagacagataca 49041638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 184
Target Start/End: Original strand, 50251172 - 50251308
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctc 147  Q
    ||||| ||||||| | |||||| |||   |||||||||||||||| ||||| |||||| |||| ||||| ||  ||||||||| |||||| || |||||     
T  50251172 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaaccta 50251271  T
Q  148 aacatgatttgtattatcaattcatgaggcagataca 184  Q
    |  |  |||||  | |||||||| |||||||||||||    
T  50251272 actaaaatttgagtgatcaattcgtgaggcagataca 50251308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 50672220 - 50672161
Alignment:
Q  62 attttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaac 121  Q
    |||||||||| || ||||||||||| ||||| | |||||||||| |||||||||| ||||    
T  50672220 attttgcaaaattgtgatcagagatgagagaaagccatgacttagaaacacacttgaaac 50672161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 5e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 12200017 - 12199897
Alignment:
Q  52 tcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 151  Q
    |||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||||| ||    
T  12200017 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12199918  T
Q  152 tgatttgtattatcaattcat 172  Q
     |||||| || || |||||||    
T  12199917 ggatttgaatgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 12444445 - 12444325
Alignment:
Q  52 tcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 151  Q
    |||| |||||| |||||||||| | |||||||||||||||| |||||||||||||||||||| || |||| || ||||||||||||||| ||||||| ||    
T  12444445 tcaacatgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagca 12444346  T
Q  152 tgatttgtattatcaattcat 172  Q
     |||||| || || |||||||    
T  12444345 ggatttgaatgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 54 - 178
Target Start/End: Original strand, 4032286 - 4032410
Alignment:
Q  54 aaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatg 153  Q
    ||||||||| |||||||||| | ||||||| ||||||| |||||| || |||||||||||||| |||||||||||||||||||  ||||  ||||  | |    
T  4032286 aaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttcattggtagtctcagtaag 4032385  T
Q  154 atttgtattatcaattcatgaggca 178  Q
    ||||| || ||||||||||||||||    
T  4032386 atttggatgatcaattcatgaggca 4032410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 21 - 147
Target Start/End: Complemental strand, 15348603 - 15348477
Alignment:
Q  21 aattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaa 120  Q
    |||||||  |||||||||||| | |  || || |||||| || ||||| |||| | |||||||||||||||| ||||| ||||||||||| || || |||    
T  15348603 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 15348504  T
Q  121 cgtataagagacttcaccggtaacctc 147  Q
    |||||||||||||||||||||||||||    
T  15348503 cgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 12194999 - 12194892
Alignment:
Q  64 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 163  Q
    ||||||||||   |||||||||||||||||||||||||||||||||  || || |||| || ||||||||||||||| ||||||| || |||||| || |    
T  12194999 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12194900  T
Q  164 tcaattca 171  Q
    | ||||||    
T  12194899 ttaattca 12194892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 12439427 - 12439320
Alignment:
Q  64 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 163  Q
    ||||||||||   |||||||||||||||||||||||||||||||||  || || |||| || ||||||||||||||| ||||||| || |||||| || |    
T  12439427 tttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatga 12439328  T
Q  164 tcaattca 171  Q
    | ||||||    
T  12439327 ttaattca 12439320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 81 - 183
Target Start/End: Complemental strand, 21015457 - 21015355
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcaga 180  Q
    |||||||||||| ||| || |||||||||||||||| ||||||| ||||||| | ||||||||||||||||  ||| | || |||||||| |||||||||    
T  21015457 agagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgaccggtaacctcaacaaaattaggatgatcaattcttgaggcaga 21015358  T
Q  181 tac 183  Q
    |||    
T  21015357 tac 21015355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 184
Target Start/End: Original strand, 21979990 - 21980144
Alignment:
Q  30 agtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataaga 129  Q
    |||||||||||| | |  ||| |||||||| || || ||||||||  ||| |||||| ||||| ||||| ||||||||||||||||| ||||||   |||    
T  21979990 agtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgtgagaga 21980089  T
Q  130 gacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagataca 184  Q
    ||||| || ||| |||| | || |||||  ||||||| |||||||||||||||||    
T  21980090 gactttactggttaccttagcaggatttcgattatcagttcatgaggcagataca 21980144  T

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Target: scaffold0508 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 48 - 146
Target Start/End: Complemental strand, 11976 - 11878
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacct 146  Q
    ||||| |||||| || |||||||||| || ||||||||||||||| |||||||||||||||||  | || ||||| ||||||||||| | |||||||||    
T  11976 aagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacggataagagacttaatcggtaacct 11878  T

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Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 29695898 - 29695768
Alignment:
Q  16 aacacaattctattagtgtgtgttgcagtgcaaagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacact 115  Q
    |||| ||||||||| |||||||| || |||  ||||| |||||| || |||||||||| | | | ||| ||||||||||||||| |||||||||| || |    
T  29695898 aacataattctattcgtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatt 29695799  T
Q  116 taaaacgtataagagacttcaccggtaacct 146  Q
    | ||||| ||||||||||| || ||||||||    
T  29695798 tgaaacgaataagagacttgactggtaacct 29695768  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 29712866 - 29712929
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 144  Q
    |||||||||||| |||||| |||||||||| ||||| ||||| |||||||||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaac 29712929  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 29687765 - 29687669
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 144  Q
    ||||| |||||| || |||||||||| | | | ||| || ||||| ||||| ||||||||||||||||| || ||||||||||||||||| ||||||    
T  29687765 aagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaac 29687669  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 178699 - 178638
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaa 143  Q
    ||||| ||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagagacttaactggtaa 178638  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 82 - 151
Target Start/End: Complemental strand, 1812105 - 1812036
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaaca 151  Q
    ||||||||||| |||||| |||||||||| || ||  ||||||| ||| ||||||| |||||||||||||    
T  1812105 gagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacctcaaca 1812036  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  81 agagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaac 144  Q
    |||||| ||||| ||||| ||||||||||| || || ||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 24340112 - 24340030
Alignment:
Q  64 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacct 146  Q
    |||||||||| || |||||||||||| || |||||||||||||||||| | || ||||| ||||||||||| |||||||||||    
T  24340112 tttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaacgaataagagacttaaccggtaacct 24340030  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 24309891 - 24309796
Alignment:
Q  48 aagttcaaaatgcgattttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaa 143  Q
    ||||| |||||| || |||||||||| |  ||||||||||||||| |||||| ||||||||||  | || ||||| ||||||||||| ||||||||    
T  24309891 aagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccggtaa 24309796  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 24415514 - 24415417
Alignment:
Q  85 ataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtattatcaattcatgaggcagata 182  Q
    |||||||| ||||| ||||||| ||| || || ||||| ||||||||||| |||||||| ||||| | ||||||  | |||||||||| |||||||||    
T  24415514 ataagagaaaaccaagacttacgaacgcatttgaaacgaataagagacttaaccggtaatctcaataggatttgggtgatcaattcatcaggcagata 24415417  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 82 - 138
Target Start/End: Complemental strand, 24322142 - 24322086
Alignment:
Q  82 gagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcacc 138  Q
    ||||||||||| ||||| ||||||||||| || || ||||| |||||||||||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 64 - 182
Target Start/End: Complemental strand, 24366853 - 24366735
Alignment:
Q  64 tttgcaaagttatgatcagagataagagataaccatgacttacaaacacacttaaaacgtataagagacttcaccggtaacctcaacatgatttgtatta 163  Q
    |||||||||| | |||  ||||||||||| ||||||||||| |||||||| || ||||| || ||||  |  || |||||||||| || ||||||  | |    
T  24366853 tttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagtttcaactggtaacctcagcaggatttgggtaa 24366754  T
Q  164 tcaattcatgaggcagata 182  Q
    ||||||||| ||| |||||    
T  24366753 tcaattcatcaggaagata 24366735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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