View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12642_low_4 (Length: 455)
Name: NF12642_low_4
Description: NF12642
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12642_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 2518248 - 2517813
Alignment:
| Q |
16 |
aaattcttgtttcttaatacatcatatgtttcacaaagcttgtcaatgacttttctcccaactcctttcacttcaaccgcatgtccatcttgataacata |
115 |
Q |
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| T |
2518248 |
aaattcttgtttcttaatacatcatatgtttcacaaagcttgtcaatgacttttctcccaactcctttcacttcaaccgcatgtccatcttgataacata |
2518149 |
T |
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| Q |
116 |
aagcaacctaaacaacaatgtttgattatttatgatgttagaaatcatgaataggtatgtttttcacatatgcacat-cacaacgaaacatgatatattt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2518148 |
aagcaacctaaacaacaatgtttgattatttatgatgttagaaatcatgaataggtatgtttttcacatatgcacatacacaacgaaacatgatatattt |
2518049 |
T |
|
| Q |
215 |
tgagaatgagaagaacatacattgtagtgatagaagtagccgtcattcttgctcaggccaactcgaaaatggttcgctaagagttgtatcttggctccct |
314 |
Q |
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| T |
2518048 |
tgagaatgagaagaacatacattgtagtgatagaagtagccgtcattcttgctcaggccaactcgaaaatggttcgctaagagttgtatcttggctccct |
2517949 |
T |
|
| Q |
315 |
cggatccaagacctctcctggccatgggcacatggtttgaattcaatgtctttctcatttcctcattgttcaatgagtattccatttcttagatcctgct |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2517948 |
tggatccaagacctctcctggccatgggcacatggtttgaattcaatgtctttctcatttcctcattgttcaatgagtattccatttcttagatcctgct |
2517849 |
T |
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| Q |
415 |
gaaaataagatcaaaattttgggtattcttctcact |
450 |
Q |
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|||||||||||||||||||||||||||||| ||||| |
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| T |
2517848 |
gaaaataagatcaaaattttgggtattcttgtcact |
2517813 |
T |
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